PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1339
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 279aa    MW: 32290.2 Da    PI: 8.6366
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1339genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.37.3e-32959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifs++gklye+ss
  Gh_A07G1339  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSNRGKLYEFSS 59
                 79***********************************************96 PP
2K-box97.81.6e-3280170999
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++e++++s++qe+ kL++++e Lqr+qRhllGedL++L++keL++Le+qLe +l + R++K+++++eq+++l+kke++l + nk+L  kle
  Gh_A07G1339  80 THERETQSWYQEVIKLNAKYEALQRTQRHLLGEDLGPLNMKELHNLEKQLEGALARARQRKTQIMMEQMDDLRKKERQLGDLNKQLIIKLE 170
                  68999*********************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.852161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.53E-45272No hitNo description
SuperFamilySSF554551.83E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-2980169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.12785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSN RGKLYEFSSS  60
GMTKTLERYQ RCCFIPHDNT HERETQSWYQ EVIKLNAKYE ALQRTQRHLL GEDLGPLNMK  120
ELHNLEKQLE GALARARQRK TQIMMEQMDD LRKKERQLGD LNKQLIIKLE AEGQNLETIQ  180
GLWGCCGAAA TENFPLHLSQ TQPMECDLQP VLQIGYHHYV EAEGSSAPKD MAGETNFIHG  240
WALQYPFEPS RPSCRLIVAL IYKLFNIVLV RTYYSINLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-22761734104Developmental protein SEPALLATA 3
4ox0_B2e-22761734104Developmental protein SEPALLATA 3
4ox0_C2e-22761734104Developmental protein SEPALLATA 3
4ox0_D2e-22761734104Developmental protein SEPALLATA 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141ARARQRKTQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.224820.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556410.0KC155641.1 Gossypium hirsutum MADS box protein MADS46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642830.10.0PREDICTED: agamous-like MADS-box protein AGL6 isoform X1
SwissprotQ8LLR11e-138MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0B0MGB01e-180A0A0B0MGB0_GOSAR; Agamous-like MADS-box protein AGL6
TrEMBLA0A1U8P5P81e-180A0A1U8P5P8_GOSHI; agamous-like MADS-box protein AGL6
STRINGGorai.001G172200.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-109AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]