PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1332
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 816aa    MW: 88711.9 Da    PI: 6.2433
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1332genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-21107162156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Gh_A07G1332 107 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 162
                  688999***********************************************999 PP
2START203.21.1e-633025271206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela++a++elvk+a+ +ep+W +s     e +n de+ + +++  +     + +ea+r +gvv+ ++  lve+l+d++ +W e+++    + +t++vi
  Gh_A07G1332 302 ELALAAMDELVKMAQTDEPLWIRSLeggrEVLNHDEYSRMVTPCIGikpagFLTEASRQTGVVIINSLALVETLMDSN-RWAEMFPcmiaRTSTTDVI 398
                  5899*********************99998899999999998887799******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                  ssg      ga+qlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +     +v++++lpSg+++++++ng+skvtwvehv+++++
  Gh_A07G1332 399 SSGmggtrnGAIQLMHAELQLLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTLRETSGaPTTYVKCRRLPSGCVVQDMPNGYSKVTWVEHVEYDES 496
                  *********************************************************9998899********************************** PP

                  XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                  ++h l+r+l++sg+ +ga++wvatlqrqce+
  Gh_A07G1332 497 QVHHLYRPLLSSGIGFGAQRWVATLQRQCEC 527
                  *****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-2092164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2196164IPR009057Homeodomain-like
PROSITE profilePS5007117.41104164IPR001356Homeobox domain
SMARTSM003899.9E-18105168IPR001356Homeobox domain
CDDcd000861.31E-18106164No hitNo description
PfamPF000461.4E-18107162IPR001356Homeobox domain
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
PROSITE profilePS5084845.113293530IPR002913START domain
SuperFamilySSF559617.69E-35295527No hitNo description
CDDcd088751.37E-125297526No hitNo description
SMARTSM002342.5E-48302527IPR002913START domain
PfamPF018521.3E-55302527IPR002913START domain
SuperFamilySSF559611.47E-23582809No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MNLGGSLNNS SGGGLGGATI VADIPFSNNM AAAGAMAQNI YNSPGLSLAL QQPSIDNQGD  60
GVRMGENFDA SIGRRSREEE HESRSGSDNI DGVSGDDQDA ADNRPRKKRY HRHTPQQIQE  120
LEALFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN SLLRQENDKL  180
RAENMSIREA MRNPICTNCG GPAIIGDLSL EEQHLRIENA RLKDELDRVC ALASKFLGRP  240
LSSLATSIAP PLPNSNLELG VGSNGFGGLS TTLPLGPDFG GGVSNSLPVV PPNGVERSMF  300
LELALAAMDE LVKMAQTDEP LWIRSLEGGR EVLNHDEYSR MVTPCIGIKP AGFLTEASRQ  360
TGVVIINSLA LVETLMDSNR WAEMFPCMIA RTSTTDVISS GMGGTRNGAI QLMHAELQLL  420
SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTLRETSGAP TTYVKCRRLP SGCVVQDMPN  480
GYSKVTWVEH VEYDESQVHH LYRPLLSSGI GFGAQRWVAT LQRQCECLAI LMSSTVPTGD  540
HTGNPIITLR RTDLYTYIHT LIVTLIFVAI TASGRRSMLK LAQRMTGNFC AGVCASTVHK  600
WNKLNAGNVD EDVRVMTRKS VDNPGEPPGI VLSAATSVWL PVSPQRLFDF LRDERLRSEW  660
DILSNGGPMQ EIAHIAKGQD HGNCVSLLRS SAMNTNQSSM LILQETCMDA GGSLVVYAPV  720
DIPAMQVVMS GGDSAYVALL PSGFSIIPDG TASPGPTTSN GNGDSHRVGG SLLTVAFQIL  780
VNSLPTAKLT VESVETVNNL ISCTVQKIKA ALQCES
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608938.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D2PSP00.0A0A0D2PSP0_GOSRA; Uncharacterized protein
STRINGGorai.001G171000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]