PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1198
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 530aa    MW: 57519.9 Da    PI: 7.0154
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1198genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31277335259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+
  Gh_A07G1198 277 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKSILITTYEGNHNHP 335
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33261337IPR003657WRKY domain
SuperFamilySSF1182904.71E-28269337IPR003657WRKY domain
PROSITE profilePS5081129.964271337IPR003657WRKY domain
SMARTSM007741.6E-37276336IPR003657WRKY domain
PfamPF031064.8E-27278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEKQHSRELT FLHSGDSLRP NSGVADRTLE DSSDHVEPHI KEMDFFSTQY QSHDHHHHHH  60
HQEGNTNNNG SSSFIDSSVN IGLNLLSSSP GVSRATNEEK HKAQESALKV ELEKLNEENR  120
RLRSMLDQIT KNYNELQGQL LMALQKQAHR NQQEQQKDAV NGMASSIMSV QQFMDPRPSS  180
ALDVNEPSGS DDKTQELSAS PENTMEIVSK EYDHRMVQNM PGKQVSIEDS TDQTSQNWGS  240
LKSPKVDQSK NEDQVSEVPF RKARVSVRAR SEAPLISDGC QWRKYGQKMA KGNPCPRAYY  300
RCTMAVGCPV RKQVQRCADD KSILITTYEG NHNHPLPPAA TAMANTTSAA AAMLLSGSTK  360
SKDGLPTSAY YPSLPYASSM ATLSASAPFP TITLDLTQGP NAVQMLRPPP SATSFPLPLH  420
GYPQLLGNPM FGPSKLSTAS PALQLGQRPA SMVETVTAAI ASDPNFTAAL AAAISTIMGA  480
PPRNQGNSSN NNDENNNSSN GVGVPALPGS PQIQQSCTTF SSKACTNKPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21263339176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.83294e-38boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO64813254e-38
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698210.0KF669821.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743736.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A1U8NXP80.0A0A1U8NXP8_GOSHI; probable WRKY transcription factor 47
STRINGGorai.001G147900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-69WRKY family protein