PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1136

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 416aa MW: 47333 Da PI: 5.2399

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1136	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.4	6.8e-22	111	204	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W+++ v++Li++++ ++++ + + +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ d++ Gh_A07G1136 111 KWKDNVVRLLIAVVSCVGDEEGVEGlkrksrilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPSLMDSM 204 7************555544432112334566********************************************669999999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.0E-19	109	231	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDDSGLECGF LSGPNGGLFD LESSIQIEQQ PQNHVVMMTG LGNEHRSTGL TEAKGSSQKG 60 FPMNFGKGKG VSPVIAITDG SMSEEDEPSY NEDGNGEKCE GKNGWPWKRM KWKDNVVRLL 120 IAVVSCVGDE EGVEGLKRKS RILQKKGKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK 180 KLNDILGRGT SCRVVENPSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN 240 CQDLDLQGCI PSERCLKDNN GSHKEEVDSE DDDDNDDDDD DDDDDDDDDY AVCEEERMGE 300 VKERKKASAE CGGHDGFKFQ EGTRSSMVGK DRIKRQMVQL QEERVKLQTD AFELEKQRFK 360 WVQYCSKKDR ELERLRLEKE RRRLENKQSI LQLRRKVVEV GSLGIDRQSQ IDMCSR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDDSGLECGF LSGPNGGLFD LESSIQIEQQ PQNHVVMMTG LGNEHRSTGL TEAKGSSQKG  60
FPMNFGKGKG VSPVIAITDG SMSEEDEPSY NEDGNGEKCE GKNGWPWKRM KWKDNVVRLL  120
IAVVSCVGDE EGVEGLKRKS RILQKKGKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK  180
KLNDILGRGT SCRVVENPSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN  240
CQDLDLQGCI PSERCLKDNN GSHKEEVDSE DDDDNDDDDD DDDDDDDDDY AVCEEERMGE  300
VKERKKASAE CGGHDGFKFQ EGTRSSMVGK DRIKRQMVQL QEERVKLQTD AFELEKQRFK  360
WVQYCSKKDR ELERLRLEKE RRRLENKQSI LQLRRKVVEV GSLGIDRQSQ IDMCSR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.24428	7e-61	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626548.1	0.0	PREDICTED: uncharacterized protein LOC108469929
TrEMBL	A0A1U8PA67	0.0	A0A1U8PA67_GOSHI; uncharacterized protein LOC107955867
STRING	Gorai.001G139700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-72	sequence-specific DNA binding transcription factors