PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1069

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 489aa MW: 53846.2 Da PI: 9.9001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1069	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Gh_A07G1069 121 WKCEKCSKKYAVQSDWKAHSKIC 143 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-4	109	142	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MMSPDGLSIP STVKGLAQAQ QPNPNPNPNP VKKKRNFPGT PGKSRCRGYS FVPKISHGDQ 60 QIPLRGHNLP WKLKQRTNKE VRKKVYICPE KTCVHHDPSR ALGDLTGIKK HFSRKHGEKK 120 WKCEKCSKKY AVQSDWKAHS KICGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARFT 180 SVSTNVNPAA ASFRNDLIHG ANNNGMHQFS SGFRPEFGGL ELVDNLNSNG QNPRLQLWLD 240 EANNPFGIPS NTNAFLAPKS TSFPDLGMAP MNMFGSLTTH WLGKYPEDAS FAGANLNMSA 300 LRQGPKQEEE NKGDLSESIT SLYSNNSLQQ QQQQNHTHMS ATALLQKAAQ MGSTRNNPAI 360 NNSGFGLISS NTYDQNKNHV YKLFKQTNDQ SDNINELVSS LSSNQAAIVK DGSALDDLKS 420 SSFVRNASSK GKQGDQAVVL ASKLNNTNSN EVESSLTRDF LGVGGESSRP LLQQELAKFA 480 SMGSIHPWS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MMSPDGLSIP STVKGLAQAQ QPNPNPNPNP VKKKRNFPGT PGKSRCRGYS FVPKISHGDQ  60
QIPLRGHNLP WKLKQRTNKE VRKKVYICPE KTCVHHDPSR ALGDLTGIKK HFSRKHGEKK  120
WKCEKCSKKY AVQSDWKAHS KICGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARFT  180
SVSTNVNPAA ASFRNDLIHG ANNNGMHQFS SGFRPEFGGL ELVDNLNSNG QNPRLQLWLD  240
EANNPFGIPS NTNAFLAPKS TSFPDLGMAP MNMFGSLTTH WLGKYPEDAS FAGANLNMSA  300
LRQGPKQEEE NKGDLSESIT SLYSNNSLQQ QQQQNHTHMS ATALLQKAAQ MGSTRNNPAI  360
NNSGFGLISS NTYDQNKNHV YKLFKQTNDQ SDNINELVSS LSSNQAAIVK DGSALDDLKS  420
SSFVRNASSK GKQGDQAVVL ASKLNNTNSN EVESSLTRDF LGVGGESSRP LLQQELAKFA  480
SMGSIHPWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-38	117	185	3	71	Zinc finger protein JACKDAW
5b3h_F	7e-38	117	185	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	83	KLKQRTNKEVRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15052	0.0	boll\| embryo\| leaf\| ovule\| stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527185	1e-133	HQ527185.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GHRJ2 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016743946.1	0.0	PREDICTED: protein indeterminate-domain 9-like
TrEMBL	A0A1U8NYB2	0.0	A0A1U8NYB2_GOSHI; protein indeterminate-domain 9-like
STRING	Gorai.001G131000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	8e-72	C2H2-like zinc finger protein