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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 160aa MW: 18441 Da PI: 9.5184 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Gh_A07G0996 68 FMCRKCGKTFAVKGDWRTHEKNC 90 89*****************9987 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 97 | 114 | 5 | 22 |
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 Cg F++k +Lk Hir+ Gh_A07G0996 97 TCGSDFKHKRSLKDHIRS 114 799*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.72E-7 | 54 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 64 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.704 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MHMWGHGSEY RKGPDSLKGS QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK 60 RKHGAKPFMC RKCGKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS 120 PHPSLERFED DKECITGSED EFAHWTTTDS LVSDKYSSFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744007.1 | 1e-118 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 3e-85 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A1U8NYH1 | 1e-117 | A0A1U8NYH1_GOSHI; zinc finger protein WIP3-like | ||||
STRING | Gorai.001G121700.1 | 1e-104 | (Gossypium raimondii) | ||||
STRING | EOY33469 | 1e-104 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-87 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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