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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 399aa MW: 43741.7 Da PI: 5.0701 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.6 | 3.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Gh_A07G0806 4 NCDFCGDQRPVVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 20.9 | 7.4e-07 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++++++ C + ++ lC++C +H g H+++ Gh_A07G0806 46 LLCERCNSQPAFVRCVEERVSLCQNCDWMGH-GtstsnsrHKRQ 88 57*****************************.547777788765 PP | |||||||
3 | CCT | 63.3 | 7.6e-22 | 342 | 385 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktR FeK++rY+sRKa+A+ R+RvKGrFvk+ Gh_A07G0806 342 RTDAVMRYKEKKKTRMFEKRVRYASRKARADVRKRVKGRFVKAG 385 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.2 | 5 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-7 | 5 | 47 | No hit | No description |
SMART | SM00336 | 8.2E-9 | 5 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.973 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.7 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.1E-17 | 342 | 384 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.239 | 342 | 384 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MGYNCDFCGD QRPVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 VEERVSLCQN CDWMGHGTST SNSRHKRQAI NCYSGCPSSA ELSSIWPFFQ QPPSAGESSC 120 ERELGLMSIN ENIASTSWGP TENNISQDNT GIAITNDTCN SDKESGMGES SGRLLDQPSG 180 SKDTSLPKLC CPQTKYPGLS EDDLYDDFNM DEVDLNLEKY EELFGMTLNH SEELLENGGI 240 ASLFGTKDMP AADSDCQVAA AAEGSSVGLV NAIQPACSNA ASADSMMSNK TDSILYFTAR 300 RPHPGESSAG DYQDCGASSM LLMGEPPWCP PCTETSFTSA TRTDAVMRYK EKKKTRMFEK 360 RVRYASRKAR ADVRKRVKGR FVKAGDAYDY DPLSPTRSF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19665 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016721833.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017646021.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_017646099.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-140 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0B0MHQ8 | 0.0 | A0A0B0MHQ8_GOSAR; Zinc finger CONSTANS-LIKE 9-like protein | ||||
TrEMBL | A0A1U8M852 | 0.0 | A0A1U8M852_GOSHI; zinc finger protein CONSTANS-LIKE 9-like | ||||
STRING | Gorai.001G099700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-122 | CONSTANS-like 9 |