 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A07G0593 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 380aa MW: 43744 Da PI: 7.3747 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A07G0593 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 74.6 | 7.8e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk
Gh_A07G0593 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53
689****************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60
RSNIEEVIVK FAQLTPQERA KRKLESLEAL KKTFMKLDHD LNIHDFLGAK YEMTKEVSRF 120
RAQLAEVHKR LSYWSNPDKI DNIEHLRQME DSLRESIERV RIHKENFGKH HLMSLECCNQ 180
VAKIFSPPVC VCFWERYLTT YDGLQFQNRI PLSVMIGAVQ EAQPVMWLPN NENHHMLLHN 240
ELNFLPHRDA ECSTDCSLAG YSGFFGSGKQ TEISSSGQVD NVVQECNALN ELGSNACLNL 300
EPGEQYFYQP YSASNYQDDE KLKTEMEVNL QGNPVVNQVI SNFEIPRPMY NNGHQAWVLS 360
SGPCGIAMFD GNSYHQVRII
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 1e-14 | 1 | 92 | 1 | 90 | MEF2C |
| 5f28_B | 1e-14 | 1 | 92 | 1 | 90 | MEF2C |
| 5f28_C | 1e-14 | 1 | 92 | 1 | 90 | MEF2C |
| 5f28_D | 1e-14 | 1 | 92 | 1 | 90 | MEF2C |
| 6c9l_A | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HM236449 | 0.0 | HM236449.1 UNVERIFIED: Gossypium hirsutum MADS33-like mRNA, partial sequence. |
