PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0366

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 209aa MW: 23978.5 Da PI: 5.6688

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0366	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.6	3.7e-19	39	89	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa + +g Gh_A07G0366 39 CKYRGVRMRS-WGKWVSEIREPKK---NSRIWLGTFPTAEMAARAHDAASIAVKG 89 79***998.******976...4******************9776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.37E-31	39	99	No hit	No description
Pfam	PF00847	1.4E-12	39	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-31	40	98	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.8	40	97	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-35	40	103	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.73E-21	40	98	IPR016177	DNA-binding domain
PRINTS	PR00367	6.9E-11	41	52	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-11	63	79	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGLKYKKKSR REKRSSNPAK KPRVSSMKPN ASNNREKSCK YRGVRMRSWG KWVSEIREPK 60 KNSRIWLGTF PTAEMAARAH DAASIAVKGE SAYLNFPELA HQLPRPATCS HTDIQKAANE 120 AAYGNGNGMV GEEEEEEEEE EEEEERFERV ATSSTTMSSE DSDLSMWFDL PDLSLEPDGT 180 HHRFGFNSWW QHEQAGIHTD FQFEETMME

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	40	97	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616573	5e-87	JX616573.1 Gossypium hirsutum clone NBRI_GE61335 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633855.1	1e-137	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	7e-42	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1U8PAA4	1e-114	A0A1U8PAA4_GOSHI; ethylene-responsive transcription factor ERF035-like
STRING	Gorai.001G049800.1	1e-105	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60490.1	8e-41	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]