PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0361
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 308aa    MW: 34618.3 Da    PI: 6.9161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0361genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05181203123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+++F+++  L  Hi +H
  Gh_A07G0361 181 YKCETCNRTFRSHQALGGHIASH 203
                  9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-8179254No hitNo description
PfamPF139122.7E-6181203IPR007087Zinc finger, C2H2
SMARTSM003550.0069181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
PfamPF139127.8E-9232254IPR007087Zinc finger, C2H2
SMARTSM003550.059232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNLSIYKRVQ GHNCPKLWQR FVVENGHQQP STNPLPPTTH YQQQQSTTNF KPFLNNFPNF  60
SLPPSSSSSN PPLSSLTSTK HELSTDSTES PENPSGKRSK HLPKFSSDMA MNDSPSDSVS  120
SPFSMEDAAL CLLMLSRNDR TDNPKLTQGY EISDHGVGFD YEKDEEDGEF FTEAKAHPKC  180
YKCETCNRTF RSHQALGGHI ASHNFKNKKI AQEEAENGGD ATGHKIHQQR IFECEFCDRV  240
FQSGQALGGH KKIHFGYSPS VTHNRISIKF KPTVQPFDLN LPPSEQDDDE VSLAQNTVRR  300
PSIYDKAI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.87936e-73boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738490456e-73
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158371e-105JX615837.1 Gossypium hirsutum clone NBRI_GE60071 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633832.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2P5X7C90.0A0A2P5X7C9_GOSBA; Uncharacterized protein
STRINGGorai.001G049300.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-21C2H2-like zinc finger protein