PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 1081aa MW: 119374 Da PI: 4.9774 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.4e-19 | 100 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l Gh_A07G0175 100 KGQWTPEEDEILRKAVQQFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 146 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 64.9 | 1.5e-20 | 152 | 198 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l Gh_A07G0175 152 KGPWSKEEDELIIELVNKFGPKKWSTIAQHLP-GRIGKQCRERWHNHL 198 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.8 | 7.8e-16 | 204 | 246 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Gh_A07G0175 204 KEAWTQEEELALIRAHQVYGNK-WAELSKFLP-GRTDNAIKNHWN 246 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.826 | 95 | 146 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-16 | 99 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 100 | 146 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.6E-16 | 101 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 102 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-14 | 103 | 146 | No hit | No description |
PROSITE profile | PS51294 | 33.034 | 147 | 202 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-32 | 149 | 245 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-19 | 151 | 200 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-19 | 152 | 198 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.45E-17 | 154 | 198 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-28 | 159 | 201 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-22 | 202 | 253 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-16 | 203 | 251 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.316 | 203 | 253 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.8E-14 | 204 | 247 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-12 | 206 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1081 aa Download sequence Send to blast |
MALKALKFGS HFLTNFISSV GSANVHRFYL LSFPVPRFLV FGAQFGELEL GYASLFISKG 60 TMDGDGTIST PSVGPSISDG AQRMRAFHGR TSGPTRRSTK GQWTPEEDEI LRKAVQQFKG 120 KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED ELIIELVNKF GPKKWSTIAQ 180 HLPGRIGKQC RERWHNHLNP AINKEAWTQE EELALIRAHQ VYGNKWAELS KFLPGRTDNA 240 IKNHWNSSVK KKVDSYVASG LLEQFQFPLL TNQSQSMPSS SSRIQRNVDD SGAKCRTEAD 300 DISECSQEPT MAGCFQPTRD LANAAVHTRE HLHLTEISGV EKEKNSCPAP CSEEYYPSLE 360 DVSFSIPEIP GEAGYSTCGD YQFGLTNLAN PSSLELGQES SGFKNHCIGT SRCHEVMNVA 420 LQTSVGLNTP TSFINTVTTS DKQEHMLITD DECCRVLFSE TVTDGCFVSE DLTQGYNMVE 480 SCSHTHASSS KASDIQKSET GITPALQSNC PSRSEVLPTS CCQSFVSPLI SVEDGTTLIY 540 GREPGQLTGQ PFETQEQELT MNVHDGFICT SDDHTYDTDM QERSYLDKDS PKLVPVNTFG 600 SESNAMQTCP IVDDKPNLPA EQDEGGLCYE PPRFPSLDIP FFSCDLISSG SDKQQEYSPF 660 GIRQLMMSSM NCISPFRLSD SPLWDDSPDA KLKSAAKTFT GTPSILKKRH RDLLSPLSER 720 RCGKKLETDM TSNLSKEFSC LDVMLDASGT GNKSQESPSE CKTKSGVFIE EKENLCQAVD 780 QERYNGGDHT EPLDDEAQKK GSNGINSQGD IEKEACVTDA KDKTYANASD KIVQRPPEVL 840 VEHNLNDLLL FSPEHVGLKA DRPLLSSSTL TPRNQGLASE CFSGNACIIV SSPTPQIKNS 900 ESQSISSATL ENLADNAGNG AAIENYNMFS ETPLKRSIES PSAWKSPWFI NSFVPGPRID 960 TEITIEDIGY LMSPPDRSYD AIGLMKQLSE HTATTYADAL EVLGNETPES IVKGRRSNNS 1020 KMDKENNQME TQSHLASDIL VERRILDFSE CGTPGNGTEN RKSSTAVSFS SPSSYLLKGC 1080 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-72 | 100 | 253 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-72 | 100 | 253 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016681612.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like isoform X3 | ||||
TrEMBL | A0A2P5XZ74 | 0.0 | A0A2P5XZ74_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G028200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |