![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_A06G1742 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
GRAS |
Protein Properties |
Length: 548aa MW: 61368.4 Da PI: 6.4232 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_A06G1742 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Ghi&pid=Gh_A06G1742) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 410.1 | 2.1e-125 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l+e+L++c +a+ ++d++++ l+ l++++s g+p+qRl ay++e+L+arl +s+s++ykal+++e + sse ++++++++ ++P++kf++ a
Gh_A06G1742 178 LKEVLIACGQALYDNDMSRVAGLMHVLEKMVSVCGEPLQRLGAYVLEGLRARLESSGSNIYKALKCQEPT---SSELMSYMHILFRICPYYKFAYTSA 272
5789*****************************************************************9...99*********************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
N I e +e e+r+HiiDf+i qG+QW+ L+ aL++Rp+gpp +R+Tg+++++s+ + l+ +g++L++fA++ +vpfef+ ++ +++++++++L
Gh_A06G1742 273 NAVIKEVMEYEQRIHIIDFQIAQGTQWMYLIAALSKRPGGPPFIRVTGIDDSQSNhaRGGGLSIVGQKLSEFAKSYNVPFEFHD-TSVSTSEIQVQNL 369
***************************************************9988889999***********************.899********** PP
GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
++ pgEalaVn+ + lh+++desv+++++rd++L+lvkslsPkvv++veqe+++n+++F+ r +e+l+yy+a+f+s+++ pr++++ri+ E+++++r
Gh_A06G1742 370 NICPGEALAVNFPYVLHHMPDESVTISNHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFSRYIETLDYYTAMFESIDVACPRDDKQRISAEQHCVAR 467
************************************************************************************************** PP
GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ivn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ ++ ++ +l++++++ yr+ e++gsl+lgW +r++ + SaWr
Gh_A06G1742 468 DIVNMIACEGQERVERHELLGKWRSRFMMAGFSPYPLSSLVTLAVRDMLKEYNNN-YRLVEREGSLYLGWINRAMATSSAWR 548
*****************************************************66.*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MQTSQKHQTR VNIHRLYHQP AKDVDQFCLP HIQILENNAC SDVGSQGPSV SYQAYKDQIF 60 TLESSTATAS FVAYDSPSAI SVSSSRSPFS PQGSQSWMSD PHHSPDNTHG SPFSGSSVVD 120 DSNGLKHKLR ELEVSLLGPE SDIIDSCNCC FTSGAHQAAS MAGLNHEQLV DMIPRLDLKE 180 VLIACGQALY DNDMSRVAGL MHVLEKMVSV CGEPLQRLGA YVLEGLRARL ESSGSNIYKA 240 LKCQEPTSSE LMSYMHILFR ICPYYKFAYT SANAVIKEVM EYEQRIHIID FQIAQGTQWM 300 YLIAALSKRP GGPPFIRVTG IDDSQSNHAR GGGLSIVGQK LSEFAKSYNV PFEFHDTSVS 360 TSEIQVQNLN ICPGEALAVN FPYVLHHMPD ESVTISNHRD RLLRLVKSLS PKVVTLVEQE 420 SNTNTSPFFS RYIETLDYYT AMFESIDVAC PRDDKQRISA EQHCVARDIV NMIACEGQER 480 VERHELLGKW RSRFMMAGFS PYPLSSLVTL AVRDMLKEYN NNYRLVEREG SLYLGWINRA 540 MATSSAWR
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |