PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1708
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 450aa    MW: 49928.1 Da    PI: 9.6539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1708genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.42.1e-14138225186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+    +  +  s++++f++l+
  Gh_A06G1708 138 CWSEGATEVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKVAAG--GGPSKWVFFEKLD 225
                  7*************************************866677776654449*****************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-25136227No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MQCLLHRRRH FLSRPTLVSV PSTDNKKTNE TENKKPKKKN LVETLIFFLF FLSIIEFSGS  60
QMEEDEEIQS YPSVVATGSS SPSSPSPASN SRITVTVAAA PPPNSPPTDE PHEHEKAIVL  120
ALPPPQKPKS NGGVREDCWS EGATEVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRED  180
YTKTPKTDIQ CKNRIDTVKK KYKLEKAKVA AGGGPSKWVF FEKLDQLIGP TAKVSASTTA  240
AVSGGGGSSS GGSADFLSKV PMGIPVGIRS SLNPFRVSQV RQQQQQQQQQ EEEEKQPRMV  300
VLKNQRKQGP VDMDSEGDDD DGDDDADSFD SLPPSPTGKR ARRVVHNKSV NAGEKRRKWG  360
NSVKELTQAI LQFGEAYEQA ETAKLQQVVE MEKQRMKFAK ELELQRMQFF MKTQLEISQL  420
KQGKKGVGIL NSGNHHSKAN NNNKNSDSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353358EKRRKW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.166100.0ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270461e-162HQ527046.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A822Y simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615514.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-109ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D2UHV90.0A0A0D2UHV9_GOSRA; Uncharacterized protein
STRINGGorai.010G235700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-61sequence-specific DNA binding transcription factors