![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A06G1675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18966 Da PI: 8.7421 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100 | 2.3e-31 | 16 | 113 | 2 | 96 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG..asnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C aCk++rr+C++ C +apyfp+ ++++++n+hklFG + nv+kl+++l +++++++a+++++ ++++ra+dPv G++++i++lq+q+e+++ael++ Gh_A06G1675 16 CLACKYQRRRCPAYCLFAPYFPHGHEQQLKNMHKLFGsgMVNVIKLVRTLeDPSKKDIAIRTIMVQSDMRAKDPVGGCYRIIQELQHQIECKQAELDQ 113 9***********************************733789********5667799**************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.957 | 14 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-30 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MRISTSGNTA IVTEDCLACK YQRRRCPAYC LFAPYFPHGH EQQLKNMHKL FGSGMVNVIK 60 LVRTLEDPSK KDIAIRTIMV QSDMRAKDPV GGCYRIIQEL QHQIECKQAE LDQIYYTIAI 120 CRAQNAHRLQ MQKIDDGDHC QMMNKLPLIG FETEKLXLIF KKLN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-20 | 5 | 115 | 1 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-20 | 5 | 115 | 1 | 108 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613626.1 | 1e-115 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A2P5W859 | 1e-112 | A0A2P5W859_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G232100.1 | 1e-109 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22102 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-34 | LOB domain-containing protein 22 |