PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1283

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 725aa MW: 79598.4 Da PI: 5.7554

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1283	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	62	113	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+ q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Gh_A06G1283 62 HRHTQRQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 113 679**********************************************998 PP
2	START	221.6	2.4e-69	247	466	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela +a++el+++a+++ep+Wv + +n+de+l++f+++ + ++ea+r+s+vv+m++++lve+l+d++ qW+ + +a+tlev+s Gh_A06G1283 247 ELAVAAMEELIRMAQSGEPLWVPGDnstDVLNEDEYLRTFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWSSVFCgivsRAMTLEVLS 343 57899***************87777799********999****************************.**99999***** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 +g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ +++p + +++++pSg+li++++ng+skv+wvehv++++r + Gh_A06G1283 344 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHIDGTWAVVDVSLDNLRPNP----MSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAI 437 *****************************************************9....688999************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h+++r++v+sgla+gak+wvatl+rqce+ Gh_A06G1283 438 HNIYRPVVNSGLAFGAKRWVATLDRQCER 466 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.0E-17	44	115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-21	51	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.499	55	115	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	57	119	IPR001356	Homeobox domain
CDD	cd00086	7.54E-17	59	116	No hit	No description
Pfam	PF00046	1.1E-16	62	113	IPR001356	Homeobox domain
PROSITE profile	PS50848	44.574	238	469	IPR002913	START domain
SuperFamily	SSF55961	3.71E-36	238	468	No hit	No description
CDD	cd08875	5.38E-128	242	465	No hit	No description
SMART	SM00234	5.4E-71	247	466	IPR002913	START domain
Pfam	PF01852	1.3E-58	248	466	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.3E-5	343	466	IPR023393	START-like domain
SuperFamily	SSF55961	9.03E-26	488	717	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MFSPNLFESP HMFDMSHKTS ESELMGKVRD DDYEIKSVTE TMDAPSGDDQ DPDQRPKMKC 60 YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKAQHERHE 120 NAILKAENEK LRAENNRYKE ALSNATCPSC GGPAALGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYVGK PLSSLPHLSS HLHSRSVDLG ASNFGTQSGF VGEMDRSGDL LRSVSGPTEA 240 DKPMIVELAV AAMEELIRMA QSGEPLWVPG DNSTDVLNED EYLRTFPRGI GPKPLGLRSE 300 ASRESAVVIM NHVNLVEILM DVNQWSSVFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE 360 FQVPSPLVPT RENYFVRYCK QHIDGTWAVV DVSLDNLRPN PMSKCRRRPS GCLIQELPNG 420 YSKVIWVEHV EVDDRAIHNI YRPVVNSGLA FGAKRWVATL DRQCERLASS MASNIPAGDL 480 CVITSLEGRK SMLKLAERMV TSFCTGVGAS TAHAWTSLSA TGSDDVRVMT RKSMDDPGRP 540 PGIVLSAATS FWIPVPPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL 600 LRVNSANSSQ SNMLILQESC TDATGSYVIY APVDIVAMNV VLSGGDPDYL ALLPSGFAIL 660 PDGPGVNGGG ILEIGSGGSL LTVAFQILVD SVPTAKLSLG SVTTVNSLIK CTVERIKAAV 720 MCNNA

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MFSPNLFESP HMFDMSHKTS ESELMGKVRD DDYEIKSVTE TMDAPSGDDQ DPDQRPKMKC  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NAILKAENEK LRAENNRYKE ALSNATCPSC GGPAALGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PLSSLPHLSS HLHSRSVDLG ASNFGTQSGF VGEMDRSGDL LRSVSGPTEA  240
DKPMIVELAV AAMEELIRMA QSGEPLWVPG DNSTDVLNED EYLRTFPRGI GPKPLGLRSE  300
ASRESAVVIM NHVNLVEILM DVNQWSSVFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHIDGTWAVV DVSLDNLRPN PMSKCRRRPS GCLIQELPNG  420
YSKVIWVEHV EVDDRAIHNI YRPVVNSGLA FGAKRWVATL DRQCERLASS MASNIPAGDL  480
CVITSLEGRK SMLKLAERMV TSFCTGVGAS TAHAWTSLSA TGSDDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPVPPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESC TDATGSYVIY APVDIVAMNV VLSGGDPDYL ALLPSGFAIL  660
PDGPGVNGGG ILEIGSGGSL LTVAFQILVD SVPTAKLSLG SVTTVNSLIK CTVERIKAAV  720
MCNNA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8852	0.0	boll\| leaf\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269\|PubMed:12505995}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN585951	0.0	JN585951.1 Gossypium hirsutum HD-1A gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016753649.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_016753650.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	I6ZZ25	0.0	I6ZZ25_GOSHI; HD-1A
STRING	Gorai.010G177800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Walford SA,Wu Y,Llewellyn DJ,Dennis ES Epidermal cell differentiation in cotton mediated by the homeodomain leucine zipper gene, GhHD-1. Plant J., 2012. 71(3): p. 464-78 [PMID:22443311] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]