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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G1167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 363aa MW: 40321 Da PI: 5.6156 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.5e-30 | 82 | 140 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dpk+++itY+ eHnh+ Gh_A06G1167 82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRLDPKMLVITYSYEHNHP 140 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-30 | 74 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.684 | 76 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-26 | 77 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 81 | 141 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-25 | 83 | 140 | IPR003657 | WRKY domain |
Gene3D | G3DSA:3.40.50.300 | 2.6E-9 | 295 | 348 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 6.6E-8 | 295 | 348 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDASDSNFNK AGNPFVSEQQ VEGNDNVSLE TGAESPPPST TFNDMKLPSP RKGRKPIQKR 60 VVSVPIKDVD SSRLKGESAP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE 120 RSRLDPKMLV ITYSYEHNHP WPASRNNTAA AKQAVAATEA ETPTMTTTAA VKPEPSTSQP 180 DTEPESGSEE RFADLTEDSI LKTRDEFGWL GEMETTSSTV LESQIFSERD NGEGDVDTNG 240 RWDHKLGCAD KWLNRISESA EEESWVVVLP IGSRNNSKPF KLELAIYSTL QNIRIFKNVK 300 GCEDAKQELE EVVEYLKNPS KFTNLGGKLP KGILLTGTFG TRKTLLAKDK EGDWLIAGDI 360 PWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-20 | 59 | 142 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 5e-20 | 59 | 142 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23842 | 2e-91 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031088 | 0.0 | KF031088.1 Gossypium hirsutum WRKY transcription factor 43 (WRKY43) mRNA, complete cds. | |||
GenBank | KF669792 | 0.0 | KF669792.1 Gossypium hirsutum WRKY transcription factor 85 (WRKY85) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016754065.1 | 1e-171 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Refseq | XP_017614345.1 | 1e-171 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 7e-57 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0B0NQF9 | 1e-170 | A0A0B0NQF9_GOSAR; Putative WRKY transcription factor 65-like protein | ||||
STRING | Gorai.010G161000.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-57 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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