PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0834
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 340aa    MW: 37736.8 Da    PI: 6.8597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0834genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.5e-18227261135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Gh_A06G0834 227 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 261
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.3E-801318IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.714221257IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-15221271IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15223285No hitNo description
CDDcd002025.49E-14226273No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13226259IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-15227261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440227252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEFIQESSYC GGDHFIVEDL LDFSNDDAVF TDGTFDSSLA LSHSTDSSTF TPVDSCNSSL  60
FSVCEPNTGT VSVAEVSTTI SLPYDDLAEL EWLSNFVEES FSCEHLQKLH LISGLKTRPE  120
KSSETRGTQA VDGDSDHSNS NSSSIFEPDM AVPAKARSKR SRAAPCNWTS RLLALSLTSS  180
SSEPGTDVAV RVQPPLTNQT GKKPVKTTSS KKKDGGEVAT NPDGWKCLHC ATDKTPQWRT  240
GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTKHSN SHRKVLELRR QKERVRAQQQ  300
HHHQPFTRHH HHHQNMVYDV SNGDDYLIHQ YVSPDFRQLI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645039.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-84GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2P5SF770.0A0A2P5SF77_GOSBA; GATA transcription factor
STRINGGorai.010G106100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-70GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]