PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G0748

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 188aa MW: 22349.1 Da PI: 10.4524

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G0748	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.1	5.4e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++gilKKA+ELS+LCd+ev +++ s++gk Gh_A06G0748 10 RLEDMKARQAKYSKRKKGILKKAKELSILCDVEVVLLLSSPSGK 53 6788999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-24	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.974	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-22	1	80	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.66E-20	2	53	No hit	No description
PRINTS	PR00404	4.6E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.5E-17	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MGRRKLKIQR LEDMKARQAK YSKRKKGILK KAKELSILCD VEVVLLLSSP SGKRTFFVGQ 60 DPNCLYNILQ KVSNMPFVER EERRAYTMEM LKKFYVNWES EFDPLSPPRN KNVDILKLYE 120 DQVQELKDKL TKKSKILRDW KNPENVKDLN QIKFMEDHLI ASLNGLRNRK NQLAMEQQSR 180 QRYLEVGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017644183.1	1e-133	PREDICTED: agamous-like MADS-box protein AGL65
TrEMBL	A0A2P5XP21	1e-130	A0A2P5XP21_GOSBA; Uncharacterized protein
STRING	Gorai.010G096200.1	1e-119	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-28	AGAMOUS-like 65