PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0565
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 189aa    MW: 21975.6 Da    PI: 8.7389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0565genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.8e-1267161187
                  EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
                  f+k+lt  dv+++ +rl++ k  +e+        +++ e+++ ++++d +g+++ ++++ + ++  +vl++GW eF+ ++ L    Df+ + ++++
  Gh_A06G0565  67 FEKQLTETDVNSKqCRLSINKVDVENAvmpllkeEENVEKGIRVKVYDANGKEFPMTFKLWAHK-LHVLKEGWIEFCTDHALLaHQDFLKLWVIRN 161
                  89*******99888**********766****9996677899*****************999997.689*************985678887766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.9E-867168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1567169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1467171IPR015300DNA-binding pseudobarrel domain
CDDcd100176.31E-1267157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEQKKAKKID HEEYKEIYGA ALCISSFKHL ILSPENAMNL QASLQATIDI PRVPSLNGLI  60
GRCSQPFEKQ LTETDVNSKQ CRLSINKVDV ENAVMPLLKE EENVEKGIRV KVYDANGKEF  120
PMTFKLWAHK LHVLKEGWIE FCTDHALLAH QDFLKLWVIR NLHTQDLCFF ITSRRLQEFQ  180
LIKKRRLNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644152.11e-137PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A2P5YR191e-138A0A2P5YR19_GOSBA; Uncharacterized protein
STRINGGorai.010G075000.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-24B3 family protein