PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0244
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 32560.3 Da    PI: 9.5788
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0244genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-264190251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v ifsstgkly+++s
  Gh_A06G0244 41 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVTIFSSTGKLYDFAS 90
                 8***********************************************86 PP
2K-box87.13.5e-29110201798
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +++ + +q+e+a L+++++nLq+++R+++Ge+L+ L +keLq+Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L kk+
  Gh_A06G0244 110 LGSPTSEVKFWQREAAILRQKLQNLQENHRQMMGEELSGLGVKELQNLESQLEMSLRGVRIKKDQILMNEIQELNRKGNIIHQENVELYKKV 201
                  34678899********************************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-343291IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.523292IPR002100Transcription factor, MADS-box
CDDcd002655.25E-4234109No hitNo description
SuperFamilySSF554552.35E-3034121IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263454IPR002100Transcription factor, MADS-box
PfamPF003192.2E-244188IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-265469IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-266990IPR002100Transcription factor, MADS-box
PfamPF014861.8E-27114201IPR002487Transcription factor, K-box
PROSITE profilePS5129715.247117207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAFLYANDNQ GQNDVSETSV CLLSLTPVPH FLSKGKIVIR RIDNSTSRQV TFSKRRNGLL  60
KKAKELAILC DAEVGVTIFS STGKLYDFAS TSMRSIIERY NKAKEEHQQL GSPTSEVKFW  120
QREAAILRQK LQNLQENHRQ MMGEELSGLG VKELQNLESQ LEMSLRGVRI KKDQILMNEI  180
QELNRKGNII HQENVELYKK VYGTRDVDGA NKDSLLTNGL GIGEDSQVPV CLQLCQPQQQ  240
SYETPTRATN LGLVKLQKNS KYGSITNKIL KRVYLLIESY VFSFITL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-1832108177MEF2C
5f28_B5e-1832108177MEF2C
5f28_C5e-1832108177MEF2C
5f28_D5e-1832108177MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in leaves, moderate levels in roots, seedlings and stems, and at low levels in flowers, pollen and siliques. Accumulates in leaf guard cells and trichomes. Also present in epidermal cells of roots (PubMed:11115127, PubMed:12837945, PubMed:12949148). Expressed in mature guard cells (PubMed:17704216). {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:17704216}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556590.0KC155659.1 Gossypium hirsutum MADS box protein MADS64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981396.11e-150PREDICTED: MADS-box transcription factor 23 isoform X5
SwissprotA2RVQ53e-99AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLU5L2C51e-149U5L2C5_GOSHI; MADS box protein MADS64
STRINGXP_006472406.11e-131(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-95AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]