PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0163
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 325aa    MW: 37099.6 Da    PI: 7.5162
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0163genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkkg+k+ll++i+
   Gh_A06G0163  25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFKKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_A06G0163 113 RRKTA 117
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.69E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKP VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEYF KKGEKHLLCE IHRRKTAQPQ  120
VTAALNHYNH HHRHLHTQSP MVNNTHYGYF PFPSRVSISP PDSDEQTTNW CDSPPLSSTT  180
GGGGSYNNSS VTALSEDNER LRRSNNLLIS ELAHMKKLYN DIIYFVQNHV KPVTPSNSYS  240
PSLLLCAPNQ HHFGYYPNSP TPQVQVLNEE PNNNKTKLFG VPLQSKKRLH PEYGGSTAAN  300
METHKPRLVL EKDDIGLNLM PSSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-222111717123Heat shock factor protein 1
5d5u_B8e-222111626131Heat shock factor protein 1
5d5v_B8e-222111626131Heat shock factor protein 1
5d5v_D8e-222111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674110.0KR067411.1 Gossypium hirsutum HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730621.10.0PREDICTED: heat stress transcription factor B-4-like isoform X1
RefseqXP_016730623.10.0PREDICTED: heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1U8MUV00.0A0A1U8MUV0_GOSHI; heat stress transcription factor B-4-like isoform X1
TrEMBLA0A2P5Y8380.0A0A2P5Y838_GOSBA; Uncharacterized protein
STRINGGorai.010G020700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4