![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A05G3854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 230aa MW: 26807.3 Da PI: 4.9439 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.1 | 2.2e-13 | 159 | 229 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr 71 Wt++e+ +L++a + + +r++l+ W+ev++k+++ + er+ +qC+++++ l+k+ykk+k++ +++ Gh_A05G3854 159 WTEHETFVLLDAWGDCFLQRGRKSLRSEEWQEVAEKVSKVSMiERTDTQCRNRLDTLKKKYKKEKAMLQRH 229 *************************************777666***********************99886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.0E-18 | 158 | 226 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-5 | 159 | 223 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.156 | 159 | 216 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MDDIEDDARY PPNQYGVSHQ RCYGSLSRRK LPVRNLPYSR SMGNQDVNDD EVEDEEDFRR 60 EAKNREQNNV AWYIGKNIDN EDDDELDDGE EEDDDDGSDK PKGYNENSND VDLERHPKKR 120 KLKNLLSSYE FAPRVPAPAA AASSMPKPSH GGRNSLTDWT EHETFVLLDA WGDCFLQRGR 180 KSLRSEEWQE VAEKVSKVSM IERTDTQCRN RLDTLKKKYK KEKAMLQRHH |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016733620.1 | 1e-146 | PREDICTED: probable DNA-directed RNA polymerase subunit delta, partial | ||||
TrEMBL | A0A1U8N3P1 | 1e-145 | A0A1U8N3P1_GOSHI; probable DNA-directed RNA polymerase subunit delta | ||||
STRING | Gorai.009G133300.1 | 1e-111 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28180 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24490.1 | 2e-18 | Trihelix family protein |