PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G3531

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 494aa MW: 54014 Da PI: 8.6985

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G3531	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	113	125	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 tC+yG+rCkF H+ Gh_A05G3531 113 TCQYGERCKFLHV 125 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.48E-6	48	104	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.5E-4	51	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MTCNLGKMSY PFEFGKVPSP SSILHSFSFF RSSYSFPGSI PLNAMLLSSV IKREISIMKL 60 IIHPNVICLY EASKGRLKED EARKYFQQLI SRGVYHRDLK DNSFKTINPF QPTCQYGERC 120 KFLHVIQQQP KSNAFGFGTQ AISHQQQKPN PFGFGVQNNA QSKGVNDFGN KQSQFKNTWT 180 RSSASSGAPS LRQPDNQPQA TNHRCNDPES CKRIIAEDFE HERPLWKLTC YSHWKNSPCD 240 IVGDVSYEEL RAAAYDDAKR GLSLQSIIER ERNLLNSKLV EFENFLRNPY RGPAGSAAAQ 300 QIPFPGATTT VLSPTTQNTV APQSNVPPSV SSFSQLGASL NTGFSPGPSV QSNNASGQPT 360 SFSNSAQSSN VFSANNVPSA NAFSFGNQQP NQSVVASFPT NMANFSNSSA TNPAINQFSA 420 AAISTQNFSS SSIQSPAFLN VSLSNSEVVG REATNVQLGN NLPTTVASGD SNIWLKEKWT 480 PGEIPEEAPP DAYV

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MTCNLGKMSY PFEFGKVPSP SSILHSFSFF RSSYSFPGSI PLNAMLLSSV IKREISIMKL  60
IIHPNVICLY EASKGRLKED EARKYFQQLI SRGVYHRDLK DNSFKTINPF QPTCQYGERC  120
KFLHVIQQQP KSNAFGFGTQ AISHQQQKPN PFGFGVQNNA QSKGVNDFGN KQSQFKNTWT  180
RSSASSGAPS LRQPDNQPQA TNHRCNDPES CKRIIAEDFE HERPLWKLTC YSHWKNSPCD  240
IVGDVSYEEL RAAAYDDAKR GLSLQSIIER ERNLLNSKLV EFENFLRNPY RGPAGSAAAQ  300
QIPFPGATTT VLSPTTQNTV APQSNVPPSV SSFSQLGASL NTGFSPGPSV QSNNASGQPT  360
SFSNSAQSSN VFSANNVPSA NAFSFGNQQP NQSVVASFPT NMANFSNSSA TNPAINQFSA  420
AAISTQNFSS SSIQSPAFLN VSLSNSEVVG REATNVQLGN NLPTTVASGD SNIWLKEKWT  480
PGEIPEEAPP DAYV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9570	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612743.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBL	A0A1U8J724	0.0	A0A1U8J724_GOSHI; zinc finger CCCH domain-containing protein 16-like isoform X1
STRING	Gorai.012G009900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10724	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	7e-85	C3H family protein