PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A05G3286

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 272aa MW: 30036.5 Da PI: 7.7001

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G3286	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.2	1.3e-22	15	61	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++s++d++ +Fslp+ dAA++Lgvc++vLK+iCR++G++RWPhRk Gh_A05G3286 15 AQSLSFDDIADFFSLPLDDAASTLGVCTSVLKKICRENGLDRWPHRK 61 5799******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.266	1	85	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-19	18	62	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSLKHHHNSN STAAAQSLSF DDIADFFSLP LDDAASTLGV CTSVLKKICR ENGLDRWPHR 60 KFLAGKSVEE IKRHAARERR REIAELSKAH RQSSQPQPQN NEQPKLQGGS ALPNLQQQGI 120 RNIQTAQALN FSHQSLMTGA AMSDEFKFGF PSDGLSVTTN KWWGSSKSDC NEVSDADGAE 180 TEGEDKHQTI EEPDDMANDK PGQNGKIEDG ISRQGSSLLA AVRKRSMEEG REALELGVYK 240 GRGMKRLGSR KASLLLRIFK SSLPDVWIHD PS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11276	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612182.1	0.0	PREDICTED: uncharacterized protein LOC108457638 isoform X1
TrEMBL	A0A2P5YCU9	0.0	A0A2P5YCU9_GOSBA; Uncharacterized protein
STRING	Gorai.012G040100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11651	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	2e-10	Nin-like family protein