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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G3205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 485aa MW: 54000.7 Da PI: 7.4565 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.8e-05 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H+r H Gh_A05G3205 49 FQCKACGRQFESMKALFGHMRHH 71 89*******************99 PP | |||||||
2 | zf-C2H2 | 20.6 | 1.2e-06 | 81 | 101 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ F++ L+ H+r+H Gh_A05G3205 81 CQECGRKFKSLKALTAHMRLH 101 *******************99 PP | |||||||
3 | zf-C2H2 | 15.5 | 5e-05 | 319 | 341 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C+k+F+++ L H+ H Gh_A05G3205 319 YRCRICNKTFKSHQALGGHQTIH 341 9***************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0055 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.863 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-7 | 49 | 73 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.06E-9 | 49 | 101 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0019 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-6 | 80 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.51E-6 | 316 | 347 | No hit | No description |
SMART | SM00355 | 0.0039 | 319 | 341 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-6 | 319 | 343 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.074 | 319 | 346 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 321 | 341 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.5E-11 | 399 | 422 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3 | 400 | 422 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 400 | 427 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 402 | 422 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MEKKCGKRKA KEKMGFQGYG LRDNPKKSWK SLGLNGDDDN AATSSTLEFQ CKACGRQFES 60 MKALFGHMRH HSARERKEVN CQECGRKFKS LKALTAHMRL HPLKSVTVKR KRSKRSRYNS 120 APNSSLSSLN ESSGLVEIDQ DVEDAALCLI MMSRGVKNWT EFNCFWESCG NSDFEIKSFH 180 QNKEILQTSF GYGDELDSYA SGSMNVFHEK NISECKELDS GILSAKEKNA ESGFELYETE 240 IKGTLSGEIM NLKSIETEQR QDLMEGLDLT GLGSTKSSSS KDAMFDACDS GPADDASNKL 300 ISIPLNSEAS DDSLRKNKYR CRICNKTFKS HQALGGHQTI HRKSNTYAEP VEDQDKTTHI 360 SSSPEIEAGC RLVKVEYVEN SVDQEMNEVT SSETRVYKVH KCLICLKVFG SGQALGGHKR 420 SHISRDPGPG DKQPAKQLDL SNISDVIDLN LPVMHNEEAN GDTRLKLCRL GTDCKNEALL 480 SLVAN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016752197.1 | 0.0 | PREDICTED: zinc finger protein 90-like | ||||
TrEMBL | A0A1U8PLZ0 | 0.0 | A0A1U8PLZ0_GOSHI; zinc finger protein 90-like | ||||
STRING | Gorai.012G049800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16241 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 3e-17 | C2H2-like zinc finger protein |