PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2476
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 420aa    MW: 48520.4 Da    PI: 6.537
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2476genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.52.1e-29104189187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gh_A05G2476 104 RWPRQETLTLLEIRSRLDSKFKEASQKGPLWDEVSRIMaEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFKQLEA 189
                  8*************************************7788****************************97..66678*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.85397162IPR017877Myb-like domain
PfamPF138371.6E-20103190No hitNo description
CDDcd122031.14E-20103169No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SDSPYLAHHR NMALSPPPYH EPPYVLSNGN  60
IAMPSGLLRF NTTGATDFTA AASASAAVGG GGWSLGNIDG GNSRWPRQET LTLLEIRSRL  120
DSKFKEASQK GPLWDEVSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN  180
YRFFKQLEAI YGETSNPSPV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS  240
SSEKMNDDEC ELSGIASMVN QKGVKKGWKT KVKDFVDSQM KRLIDSQDVW MERMLKVIEE  300
KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALKTLRS LTDKTQNEIN  360
ANRWTEHEIL ERRLQENGYS MRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.213290.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3950751e-136GQ395075.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2098 SSR marker DPL0591 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686190.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1U8J7880.0A0A1U8J788_GOSHI; trihelix transcription factor PTL-like
STRINGGorai.009G304600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-71Trihelix family protein