PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G2067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 578aa MW: 64874.2 Da PI: 5.6195 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 99.8 | 2.3e-31 | 43 | 129 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m++ +r++ lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++++t+++fd+lea Gh_A05G2067 43 RWPRQETLALLKIRSDMDSLFRDSTLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTSKADGKTKTYRFFDELEA 129 8************************************************************************************85 PP | |||||||
2 | trihelix | 104 | 1.1e-32 | 379 | 464 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s++mr g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a Gh_A05G2067 379 RWPKVEVEALIKLRTNLDIKYQDNGPKGPLWEEISAAMRNLGYNRSAKRCKEKWENINKYFKKVKENNKTR-PEDSKTCPYFHQLDA 464 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.005 | 40 | 102 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.911 | 42 | 100 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.08E-25 | 42 | 107 | No hit | No description |
Pfam | PF13837 | 4.6E-20 | 42 | 129 | No hit | No description |
SMART | SM00717 | 2.3E-4 | 376 | 438 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 378 | 435 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.399 | 378 | 436 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.50E-26 | 379 | 443 | No hit | No description |
Pfam | PF13837 | 1.2E-22 | 379 | 465 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MESSMVEGSA EAATTVAGIL EGSEGEEDRG RVDEGDRSFG GNRWPRQETL ALLKIRSDMD 60 SLFRDSTLKG PLWEEVSRKL AELGYHRSAK KCKEKFENVY KYHKRTKDGR TSKADGKTKT 120 YRFFDELEAF QNLHSLQPLS PPKPQTPTPT SASVMNPTNV PQSHATVPSI NPTLSTQPVP 180 PLHSINPCFI NISSNLFSTS TSSSTTSNDD SYQGSSGKKR KWKEFFRRLT KEVIEKQEEL 240 QNKFLQTIER CEQQRLAREE AWRVQEMARI NKEHELLVQE RSKAAAKDAA VFAFLQKVSG 300 QQPNTVQGNP QPQPQPPPPA QPMLAPLSTS LPPPPPPPVQ VPQPKTHPPP TQALNFDTSE 360 MSNGGNSAVS VSLSPSPSRW PKVEVEALIK LRTNLDIKYQ DNGPKGPLWE EISAAMRNLG 420 YNRSAKRCKE KWENINKYFK KVKENNKTRP EDSKTCPYFH QLDAIYKDKI SKNGNSLASS 480 SPYGVKPDSR ATVPLMVLPE QQWPPPRQAN NHQAETVVMM EEEADKGNVG HNNNHIQEEE 540 EEEEEEEEEE EEGDTEDEYE GNDFELVAKT APIGSGGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13250 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF495678 | 4e-99 | JF495678.1 Gossypium herbaceum clone NBRI_M187 simple sequence repeat marker, genomic sequence. | |||
GenBank | JX964091 | 4e-99 | JX964091.1 Gossypium hirsutum clone NBRI_TRANS-360 microsatellite sequence. | |||
GenBank | JX964412 | 4e-99 | JX964412.1 Gossypium hirsutum clone NBRI_TRANS-681 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642221.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-142 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A0B0MU26 | 0.0 | A0A0B0MU26_GOSAR; Trihelix transcription factor GT-2-like protein | ||||
STRING | Gorai.009G253900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4849 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-138 | Trihelix family protein |