PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G2045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 38274.3 Da PI: 9.6366 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Gh_A05G2045 18 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2e-19 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Gh_A05G2045 70 RRPFTEEEEERLLAAHHIHGNK-WALIARLFP-GRTDNAVKNHWHV 113 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.997 | 13 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-15 | 17 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 17 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 19 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.5E-17 | 21 | 81 | No hit | No description |
CDD | cd00167 | 4.28E-14 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.098 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.53E-8 | 72 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEDSGAASSD DVNKTCPRGH WRPAEDEKLR QLVEQYGAQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFTEEEEER LLAAHHIHGN KWALIARLFP GRTDNAVKNH WHVIMARKQR 120 EQSKLCGKRS FQDAFSDSKL SSTGFSTSRK LARCQEAFSS RFGFGDSRFF DQFQNQGKDK 180 IFSVSSTSTT SSPSWNFASS TMVASNNSSS AQLSIRDGKN HLLRSGSSYY SMDTSKLLDQ 240 SLYKYHSNAS AYCSSFRNSS AFGIHNYRRV VPSPFGYLKL GDNFESNNGV MTKEFLSITD 300 NAPKSANLRV SNSQQEQEDE SDKTKDVPFI DFLGVGISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 18 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527082 | 1e-100 | HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677949.1 | 0.0 | PREDICTED: myb-like protein AA | ||||
Refseq | XP_017641068.1 | 0.0 | PREDICTED: myb-like protein AA | ||||
TrEMBL | A0A0B0NFX4 | 0.0 | A0A0B0NFX4_GOSAR; Transcription factor MYB44-like protein | ||||
TrEMBL | A0A1U8IQ14 | 0.0 | A0A1U8IQ14_GOSHI; myb-like protein AA | ||||
TrEMBL | A0A2P5XNK8 | 0.0 | A0A2P5XNK8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G251700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16592 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-63 | myb domain protein 52 |