PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2001

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 425aa MW: 46878.9 Da PI: 9.3557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2001	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	197	219	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H Gh_A05G2001 197 SCPECGEIFMKAENLELHQAVrH 219 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	196	224	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	219	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.07E-22	221	424	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-15	222	423	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MAGSTHQRKP TMEAYQNQNK WPQKIDKPPS WAVLKGFFFG KHHHHQQEQE EQQKLQPKKK 60 VKKQKQQQKE QVMEETGKKC KKMRCSGSLC SNTKVIHCRP EMASPEVHKK RASFGSFDTS 120 SRSMKAPLRE INGVAVSSTN SSSLLSVSSA AAASSSAGGS FGGMPFRRFS GCYECKLVVD 180 PLLGISKDPS LRGTICSCPE CGEIFMKAEN LELHQAVRHA VSELGPEDTS KNIVEIIFKS 240 SWLKKQTPIC QIDRILKVQN TPKTISKFEE YRDSIKSKAT KKHPRCIADG NELLRFHCTT 300 FACSLGLSGS TNLCNTIPKC NGCSIIKNGF KVAQETNGKG ILTTATSGKA HDKAAGVEDG 360 DYEKRAMLVC RVIAGRVKKN IMEGDNLEEC DSVAGAVGVY SDLDELFVFN PNAILPCFVV 420 IYRGF

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MAGSTHQRKP TMEAYQNQNK WPQKIDKPPS WAVLKGFFFG KHHHHQQEQE EQQKLQPKKK  60
VKKQKQQQKE QVMEETGKKC KKMRCSGSLC SNTKVIHCRP EMASPEVHKK RASFGSFDTS  120
SRSMKAPLRE INGVAVSSTN SSSLLSVSSA AAASSSAGGS FGGMPFRRFS GCYECKLVVD  180
PLLGISKDPS LRGTICSCPE CGEIFMKAEN LELHQAVRHA VSELGPEDTS KNIVEIIFKS  240
SWLKKQTPIC QIDRILKVQN TPKTISKFEE YRDSIKSKAT KKHPRCIADG NELLRFHCTT  300
FACSLGLSGS TNLCNTIPKC NGCSIIKNGF KVAQETNGKG ILTTATSGKA HDKAAGVEDG  360
DYEKRAMLVC RVIAGRVKKN IMEGDNLEEC DSVAGAVGVY SDLDELFVFN PNAILPCFVV  420
IYRGF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15107	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604084.1	0.0	PREDICTED: uncharacterized protein LOC108450822
TrEMBL	A0A0D2UT53	0.0	A0A0D2UT53_GOSRA; Uncharacterized protein
STRING	Gorai.009G243200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	7e-95	C2H2-like zinc finger protein