PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A05G1797

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 308aa MW: 34720.4 Da PI: 6.322

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1797	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s Gh_A05G1797 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 79*******************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.025	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-30	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.11E-38	2	75	No hit	No description
PRINTS	PR00404	3.6E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-26	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN 60 KSIEEILGRY VNLPEHERGR LRNKEFLIKA LGKLRNEADQ TSQPTSPESI NPQLEEFQQE 120 IINCKSRIAN MEKRLRIFEG DASEITTLIQ ADYHEQILEE TLKQVRLHKQ VLEEKYTSPG 180 PPPTTKVKLP PNAGDVNGFV TASSSSISNH FLNFLDSNGL LPPGCASIID EAPAIAEILP 240 PHSTDLLNEE EINVEEHLSL TRGLENHNKV QHPEFGQVND VMFPWTQLYP TGSTWGPNKL 300 VRGWAFEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_R	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_S	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
5f28_A	2e-17	1	98	1	95	MEF2C
5f28_B	2e-17	1	98	1	95	MEF2C
5f28_C	2e-17	1	98	1	95	MEF2C
5f28_D	2e-17	1	98	1	95	MEF2C
6c9l_A	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_B	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_C	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_D	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_E	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_F	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749337.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
TrEMBL	A0A1U8PDR4	0.0	A0A1U8PDR4_GOSHI; agamous-like MADS-box protein AGL104 isoform X1
STRING	Gorai.009G216900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16199	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	3e-53	AGAMOUS-like 104