PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1684
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 353aa    MW: 38577.8 Da    PI: 4.5246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1684genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.88.2e-143011823128
          NAM  23 vegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektd 120
                  ++g++l+  +vi++v+ y ++P++Lp         ++f ++++++          tk g Wk++ + +ev+s ++e +g +++L +y+gr+p+ +kt+
  Gh_A05G1684  30 TSGSPLPN-NVIDHVNPYGIDPKNLPG-------GVWFLINSKEE--------VDTKGGEWKTKEEGREVFS-DSEMIGWRTSLEYYEGREPHQRKTE 110
                  45556666.88**************92.......33444444333........35789**************.999********************** PP

          NAM 121 Wvmheyrl 128
                  Wvm+ +++
  Gh_A05G1684 111 WVMEMFNV 118
                  ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.2718141IPR003441NAC domain
SuperFamilySSF1019412.75E-1927139IPR003441NAC domain
PfamPF023658.5E-633117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATPAAAPPP DISFKCTNMD DLFTCFVKIT SGSPLPNNVI DHVNPYGIDP KNLPGGVWFL  60
INSKEEVDTK GGEWKTKEEG REVFSDSEMI GWRTSLEYYE GREPHQRKTE WVMEMFNVTV  120
KRMCDEKEKQ ETSSLCRVSL VPSHEMVENG TGNHLIPHLD LDAHSSSRNP QHEETEALAV  180
AERNEGENLF GMDSGGYDIG FFAGGNFLEL KDLDNPTSPS SSSDNSSAIS ISSGECFDSL  240
AILQELDEQI LEQKDSGKKL DVLAGDKPNE LDTVPATLAG CLVSVEGSNS SSEGDESFKT  300
GVSGDPNNQV AKRAKVEEVP SSSRKPSESH GGRRKGGSLG GMLRKKYLCF MPF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5871382e-57JX587138.1 Gossypium hirsutum clone NBRI_GE21148 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752220.10.0PREDICTED: protein BEARSKIN1-like
TrEMBLA0A1U8PM140.0A0A1U8PM14_GOSHI; protein BEARSKIN1-like
TrEMBLA0A2P5YFI60.0A0A2P5YFI6_GOSBA; Uncharacterized protein
STRINGGorai.009G204700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2455534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-14NAC domain containing protein 28