![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_A05G1507 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
GRAS |
Protein Properties |
Length: 548aa MW: 61256.3 Da PI: 6.3425 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_A05G1507 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Ghi&pid=Gh_A05G1507) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 404.7 | 8.7e-124 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l++ L++c +a++++d+ ++ l+ l++++s +g+p+qRl ay++e+L+arl +s+s++y+al+++e + sse ++++++++ ++P+ kf++
Gh_A05G1507 178 LKQILVACGQALHDDDMLTVTGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSNIYRALKCKEPT---SSELMSYMHILFRICPYWKFAYTSG 272
5789*****************************************************************9...99*********************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
N I e +e e +vHiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTg+++++s+ + l+ +g+rL++fA++ +vpfef+ +a + +++le+L
Gh_A05G1507 273 NVVIKEVLEYEGKVHIIDFQIAQGTQWMFLIAALAKRPGGPPSIRITGIDDSQSNhaRGGGLHIVGQRLSEFARSYNVPFEFHD-AAMSGCEIQLEHL 369
***************************************************9988889999***********************.899999******* PP
GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
+v+pgEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPkvv+++eqe+++n+++F+ r le+l+yysa+f+s+++ pr++++ri+ E+++++r
Gh_A05G1507 370 KVHPGEALAVNFPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVVTLTEQESNTNTSPFFSRYLETLDYYSAMFESIDVACPRDDKQRINAEQHCVAR 467
************************************************************************************************** PP
GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ivn++aceg er+erhe +kWr+r+++aGF+++pls+++a+ ++ +l++++ + yr+ee++g+l+lgW +r++ ++SaWr
Gh_A05G1507 468 DIVNMIACEGPERVERHELHGKWRSRFMMAGFSQYPLSSSVAMAVRDMLEEYDHK-YRLEEREGALYLGWVNRAMATFSAWR 548
*****************************************************77.*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MRASPKHQNP ATIRRLYDQP VKENDPFYLS RIQMLDNNAC SNTGGQGTDV SFQTCKDQVF 60 TLESSMAGAG FVAYDSLSAV SISSSRSPFS PHGSQSCLSD PRPSPDNTDG SPYSGSSVVD 120 DSNKLNHKLR ELELSLLGPE SDTVDSCNGC FITGDHQAAS MASFNCAQLV DLVPKLNLKQ 180 ILVACGQALH DDDMLTVTGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSNIYRA 240 LKCKEPTSSE LMSYMHILFR ICPYWKFAYT SGNVVIKEVL EYEGKVHIID FQIAQGTQWM 300 FLIAALAKRP GGPPSIRITG IDDSQSNHAR GGGLHIVGQR LSEFARSYNV PFEFHDAAMS 360 GCEIQLEHLK VHPGEALAVN FPYVLHHMPD ESVSIWNHRD RLLRLVKSLS PKVVTLTEQE 420 SNTNTSPFFS RYLETLDYYS AMFESIDVAC PRDDKQRINA EQHCVARDIV NMIACEGPER 480 VERHELHGKW RSRFMMAGFS QYPLSSSVAM AVRDMLEEYD HKYRLEEREG ALYLGWVNRA 540 MATFSAWR
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |