PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 885aa MW: 97413.3 Da PI: 7.143 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 340 | 439 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpkk+ae+h ++++e+ l+++d++g++W +++++ +++s++yvl+ G + ++++gD+v+F++ + +++lv+ Gh_A05G1407 340 FEKMLSASDAGRIGRLVLPKKCAEAHfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDVVTFSRLE-PGGKLVM 435 89**************************555566778***************9989999999***9.********************665.7777777 PP EEE- CS B3 95 kvfr 98 ++++ Gh_A05G1407 436 GFRK 439 7776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-19 | 337 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-29 | 337 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.18E-22 | 338 | 439 | No hit | No description |
SMART | SM01019 | 1.7E-19 | 340 | 441 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-15 | 340 | 439 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 340 | 441 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.485 | 567 | 617 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.4E-12 | 572 | 614 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL 60 NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS 120 SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVPQPE LHSRMPYEVD LSTGIDRLNV 180 CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGSAG INCEEQHNPC LTKFQSSLKE 240 ESNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG 300 RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK 360 CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD 420 VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGVSM HGDAEMADPT SWSKVDKSGY 480 IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV 540 VIEGFEFEEY EDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN 600 SWDPERSSCS VIQELTAEQL ENLLPQCNPA ASKKIKAARQ ETENVDALEG LDTLANLAIL 660 GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM 720 RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKQIKIASE GSEDDPNRVK 780 SSISPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDDTD KYLRQQSTLT SGGNSNSEVS 840 QTQPGGGPEG EKISNSVNLG DSHQDIDRDH PVFSIKTSAS TSATG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-64 | 318 | 443 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13624 | 0.0 | ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698185.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1U8K6Q2 | 0.0 | A0A1U8K6Q2_GOSHI; B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
STRING | Gorai.009G173100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6857 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-164 | HSI2-like 1 |