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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Gh_A05G1360 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | Dof | ||||||||
| Protein Properties | Length: 320aa MW: 34704.1 Da PI: 9.6757 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 120.2 | 7.7e-38 | 35 | 93 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
+ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k++
Gh_A05G1360 35 HPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 93
56789**************************************************9987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 4.0E-25 | 29 | 92 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 1.3E-32 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 28.705 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
| PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 320 aa Download sequence Send to blast |
MQQDRGGRGS EQGMKQNQQQ DQRLKPLTGE NQQQHPPQKC PRCESLNTKF CYYNNYSLSQ 60 PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTKVSSSGE NSRSQPLIPQ QQAAQQHSLT 120 SPQSMISSNP MISVSAAFRT KESGSLASSS AIPSVGSYYP SAGFMSSLAA IQSMNQPQPF 180 NQPLNQALSM GGDLGGSSNL GLLQGYGVPS FGSQQHQPSQ QTQFFPMGDR DQKTVNMYPS 240 DQERLIQSSR LAAGNSSQQN WHHSFINSSD PTASEAALWS MNNNSSSSTS SAGNTNTSNT 300 TAASLNPNQW PDLPGYGAPP |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016698133.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
| Refseq | XP_016698134.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
| Refseq | XP_016698136.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
| Refseq | XP_016698137.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
| TrEMBL | A0A1U8KBV6 | 0.0 | A0A1U8KBV6_GOSHI; dof zinc finger protein DOF1.2-like | ||||
| STRING | Gorai.009G168400.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM15986 | 9 | 15 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60850.1 | 3e-33 | OBF binding protein 4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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