PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1353

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 773aa MW: 85178.2 Da PI: 6.7062

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1353	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.8e-07	257	276	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++CkF+H Gh_A05G1353 257 ICDFFAR-GWCVKGSSCKFIH 276 6****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0089	252	278	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	252	276	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.929	252	279	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.7E-5	257	276	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-4	257	276	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MPLSTPAAVP GADKDDERRT ALTTKPEFNS SDMEIDDDDE EERGEELQVS SKRNDGSNIM 60 ESKGHGGHLG SDPLSAPGRS EMRIPSKTLY VGESSASFNL CSLPDEPWAT QREDLCKNYN 120 GSKYPISGKW PANEKAIQEY GVNGQDARVI FERKAHEDHH EQHTRSKVNE IMYEATNLIS 180 VDGKEIAIND VISILGRYHS GVGVSSHGFE QKSEQMGMQT ENNKRSIKSR SSAPQTSTGS 240 LYPGAEFNSE NKRPALICDF FARGWCVKGS SCKFIHIKDS GTNPRQQSEE DAAVADEKIA 300 VQLDEGIQNT AEKSRPHSPG SSDRLPSSAR NGTASSPLIH SKDKSIGTSL GSQQFQASTD 360 DSEPSKDVRQ TSIGQSLPAD NYVKPGLLSD RGSSTFRNGF LPKHIPYLSG SVTSLGNTYK 420 ENQKYRVSTW LASLPFSSSS SACSVDAQKM LKNDREHHTS HPSSLLQGSS PFSGFEPENF 480 PATDIAKDPL HFTEYRIKIS SDDWEPSVPF RPSFFITFGS SSPRRQYDPL CDSIDLSNVG 540 ERSLKFSFSS QGPSLLDVAY PPTYDDSTSA GPLVPACNAD KIIASCHGRY VENLVNNNYH 600 TSGKDSTTDA NDGTSAADMQ NGTLVKEEIS SVASHVKDIS KTSKTDTDRD ARHRRDGFRC 660 KKDLKVDRVR EKNEIDIEHK ADGEALKESK AMRHFHAALV DLIKELLKPT WREGHLSKDA 720 HNRIVKKAVN KVIGTMQPHQ IPLTFESVKQ YLSASQSKIA RLVQGYIEKY GKS

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MPLSTPAAVP GADKDDERRT ALTTKPEFNS SDMEIDDDDE EERGEELQVS SKRNDGSNIM  60
ESKGHGGHLG SDPLSAPGRS EMRIPSKTLY VGESSASFNL CSLPDEPWAT QREDLCKNYN  120
GSKYPISGKW PANEKAIQEY GVNGQDARVI FERKAHEDHH EQHTRSKVNE IMYEATNLIS  180
VDGKEIAIND VISILGRYHS GVGVSSHGFE QKSEQMGMQT ENNKRSIKSR SSAPQTSTGS  240
LYPGAEFNSE NKRPALICDF FARGWCVKGS SCKFIHIKDS GTNPRQQSEE DAAVADEKIA  300
VQLDEGIQNT AEKSRPHSPG SSDRLPSSAR NGTASSPLIH SKDKSIGTSL GSQQFQASTD  360
DSEPSKDVRQ TSIGQSLPAD NYVKPGLLSD RGSSTFRNGF LPKHIPYLSG SVTSLGNTYK  420
ENQKYRVSTW LASLPFSSSS SACSVDAQKM LKNDREHHTS HPSSLLQGSS PFSGFEPENF  480
PATDIAKDPL HFTEYRIKIS SDDWEPSVPF RPSFFITFGS SSPRRQYDPL CDSIDLSNVG  540
ERSLKFSFSS QGPSLLDVAY PPTYDDSTSA GPLVPACNAD KIIASCHGRY VENLVNNNYH  600
TSGKDSTTDA NDGTSAADMQ NGTLVKEEIS SVASHVKDIS KTSKTDTDRD ARHRRDGFRC  660
KKDLKVDRVR EKNEIDIEHK ADGEALKESK AMRHFHAALV DLIKELLKPT WREGHLSKDA  720
HNRIVKKAVN KVIGTMQPHQ IPLTFESVKQ YLSASQSKIA RLVQGYIEKY GKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016698121.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
TrEMBL	A0A1U8K6J6	0.0	A0A1U8K6J6_GOSHI; protein FRIGIDA-ESSENTIAL 1-like
STRING	Gorai.009G167600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15617	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-49	C3H family protein