PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A05G1333

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 278aa MW: 31126.7 Da PI: 8.8681

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1333	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.6	8.4e-33	14	107	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cv+ap fpa ++++f+ vhk+FG++n++ +l+ ++er++a++sl +eA a+++dPv+G +g++++l+++l++l+ l Gh_A05G1333 14 ACAACKHQRRKCESNCVFAPFFPAGRAESFREVHKIFGVKNMTGILTPRTPDERKKAVESLEWEALAWTQDPVRGPLGLFRRLEEELQHLNDLL 107 7**************************************************************************************9988655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.319	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-31	14	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSNGEEAAPN TRHACAACKH QRRKCESNCV FAPFFPAGRA ESFREVHKIF GVKNMTGILT 60 PRTPDERKKA VESLEWEALA WTQDPVRGPL GLFRRLEEEL QHLNDLLDQL VEPYQQNQIN 120 SAGLNGFNHN SATGRVIVPN SNINATYIGY GSNPNLEIDV PPINNYDGVP PISADGLNEN 180 QLVVNNYFPG YYGIPDRLTV FRESGGVGNV GQTSTPSPTL PPKQETMPQR NQIWGPSSRR 240 PLTNNHFPLR NHRRGSQQRY QYGFLQRPAS QSQGRGLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-22	7	108	1	105	LOB family transfactor Ramosa2.1
5ly0_B	9e-22	7	108	1	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016730798.1	0.0	PREDICTED: LOB domain-containing protein 6-like
Refseq	XP_017604215.1	0.0	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	A0A1U8MZ09	0.0	A0A1U8MZ09_GOSHI; LOB domain-containing protein 6-like
STRING	Gorai.009G165600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19603	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-26	LOB domain-containing protein 2