PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1117

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 645aa MW: 70576 Da PI: 8.6361

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1117	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gh_A05G1117 151 FVCEICNKGFQRDQNLQLHRRGH 173 89*******************88 PP
2	zf-C2H2	12.3	0.0005	227	249	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Gh_A05G1117 227 WKCEKCSKKYAVQSDWKAHSKTC 249 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-5	150	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.95E-7	150	173	No hit	No description
SMART	SM00355	0.017	151	173	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	151	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	153	173	IPR007087	Zinc finger, C2H2
SMART	SM00355	67	192	222	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.7E-4	215	248	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.95E-7	222	247	No hit	No description
SMART	SM00355	140	227	247	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MMKSFMFHQQ QQQQQQQQQQ QQVLEENMSN LTSASASGEA SVSSGNRTEA GSNYPQQYFT 60 TSQQPQTQPV KRKRNLPGNP GLVWVQKALY LNTILFCYLF CSFPYLLSLS LSETQFLMHF 120 LGGFFVFYFE SDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK 180 QRTNKEVRKK VYVCPETNCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS 240 DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAV ESARAINPLL SPHQPGTAAA 300 SHMNLQVPQF NPHDIKLQPF SLKKEQQSFT PLRPEIPPWL ASQPMLGAGP GPPHPIDLSS 360 SSSSIFSQRL DHQDLTLHGT PSANPSLVPT LPPYHHTALP SPHMSATALL QKAAHMGATM 420 SRKSGSSSVP STVAAAASAS LMRPHQQTHV SADSAGTNNN TTTAGFGLDL PSREELDVGS 480 SSGIIHGLAP FGNRKPAANA GDDDDDNNNI AGTGATPSLL QDMINSLSSA TGFDATNSFD 540 DIAFGGIFNA TKKLCGSSIN ESFSKTTTPT VPTTTNATRN DHHGSTAGST TTTTTQGGDQ 600 GLTRDFLGLR AFSHTDILNI AGPGRNYCID TSQEQHNQSQ KPWQG

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MMKSFMFHQQ QQQQQQQQQQ QQVLEENMSN LTSASASGEA SVSSGNRTEA GSNYPQQYFT  60
TSQQPQTQPV KRKRNLPGNP GLVWVQKALY LNTILFCYLF CSFPYLLSLS LSETQFLMHF  120
LGGFFVFYFE SDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  180
QRTNKEVRKK VYVCPETNCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS  240
DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAV ESARAINPLL SPHQPGTAAA  300
SHMNLQVPQF NPHDIKLQPF SLKKEQQSFT PLRPEIPPWL ASQPMLGAGP GPPHPIDLSS  360
SSSSIFSQRL DHQDLTLHGT PSANPSLVPT LPPYHHTALP SPHMSATALL QKAAHMGATM  420
SRKSGSSSVP STVAAAASAS LMRPHQQTHV SADSAGTNNN TTTAGFGLDL PSREELDVGS  480
SSGIIHGLAP FGNRKPAANA GDDDDDNNNI AGTGATPSLL QDMINSLSSA TGFDATNSFD  540
DIAFGGIFNA TKKLCGSSIN ESFSKTTTPT VPTTTNATRN DHHGSTAGST TTTTTQGGDQ  600
GLTRDFLGLR AFSHTDILNI AGPGRNYCID TSQEQHNQSQ KPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	223	284	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-34	223	284	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	189	KLKQRTNKEVRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9808	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527132	0.0	HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605509.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-111	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0D2ULS0	0.0	A0A0D2ULS0_GOSRA; Uncharacterized protein
STRING	Gorai.009G141200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-93	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]