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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_A05G0702 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
C2H2 |
Protein Properties |
Length: 282aa MW: 29942.3 Da PI: 4.4271 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_A05G0702 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 256 | 279 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++C+ C+ksF + L++H + H
Gh_A05G0702 256 FSCGSCNKSFGSEGGLESHKKAkH 279
89*****************99877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MEFWGIEVKS GQPIKADPGA NYVIHLSQAS LGESKNKAES VPLYVNVDGK KLILGTLSHQ 60 SCPQLSFDLV FDEEFELSHN WKNGSVYFLG MSSEEESEEE EEEELPVAAA AAAVNGKAKP 120 DGKTAKANAG KPDAVKQSGK IAEPSSNKKS EDEDDDDESE DESGSDEEDD SDDDDESDEM 180 SMDESSDDED EETPKKVESS KKRPAEAATP ASAKKAKSAV TPQKTDGKKG GHTATPHPAK 240 QSGKNSAKSP KSGGQFSCGS CNKSFGSEGG LESHKKAKHG GK
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}. |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}. |
Functional Description ? help
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Source |
Description |
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ527448 | 2e-96 | HQ527448.1 Gossypium herbaceum clone NBRI_B_2368 simple sequence repeat marker, mRNA sequence. |