PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0596
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 318aa    MW: 35806.9 Da    PI: 7.945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0596genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0578100123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C dC+ sFs+  +L +H+r+H
  Gh_A05G0596  78 FGCFDCDASFSSMKLLCQHMRLH 100
                  56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-731100No hitNo description
PROSITE profilePS5015711.9263259IPR007087Zinc finger, C2H2
SMARTSM003550.0333254IPR015880Zinc finger, C2H2-like
PfamPF139120.0373455IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SMARTSM003550.1378100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01478105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
PfamPF139121.9E-9241265IPR007087Zinc finger, C2H2
SuperFamilySSF576677.02E-5241270No hitNo description
SMARTSM003550.97242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVPAGSSFLA FLGGKYLNTQ ETKTPPDSRN RFFCTYCCKG FKSNKALAGH LRIHSQHPPM  60
SKTEGKHFQE GDDDDSFFGC FDCDASFSSM KLLCQHMRLH RDTDSNGVHQ PAMPEESNSL  120
SEAATTFKQG TGSTVSPRDD HHNIDLLKDI NDNWSRTEKR GSKRTASEHD IVYDAEPFRV  180
YYGRMKTEET SMESELGAAD NESTVELSGN PVKTRDSPNK SKSRSCRGRR SVKQTKAVKS  240
VHRCEICDKT YETGQALGGH KSYHRVKDPL KQRKTEQQSC GEVKMVTGMV LPGLAPEEDD  300
KNPTKRMLDF DFNIPYKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752601.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1U8PN280.0A0A1U8PN28_GOSHI; zinc finger protein ZAT1-like
STRINGGorai.009G075900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.15e-06C2H2 family protein