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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 40040.9 Da PI: 8.1211 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 125 | 145 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg Gh_A05G0346 125 ACPDFRK-GSCKKGDSCEFAHG 145 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.437 | 72 | 109 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-6 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.83E-5 | 120 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 125 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.23 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MMIGESIQPN PTIKIPVGDP FNDPTASFPS VNFNYNNAVS SPCPVDYLGS LHRYLPSNDY 60 ESDSLSDDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH 120 YSGTACPDFR KGSCKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCQRR VCFFAHTPEQ 180 LRVLPQQSPR GNGSASADLD YVVSPMRHRL EFVSSPTSIL ASPPISPPSE SPPMSPSGSF 240 NSVSELAASM RSLQLGKSKM NGACSWGLQM GSGFSSPRGS TLRPGFCSSP STPTRTPTRS 300 SLGQFDIWEF NAVQEEPAME RVESGRNLRA RMYAKLSKEN SIGRLEPTGS GPDVGWVSEL 360 VK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.6200 | 0.0 | boll| leaf| ovule| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016751048.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 23-like | ||||
Swissprot | O82199 | 1e-124 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A1U8PL38 | 0.0 | A0A1U8PL38_GOSHI; zinc finger CCCH domain-containing protein 23-like | ||||
STRING | Gorai.009G047600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-118 | C3H family protein |
Publications ? help Back to Top | |||
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