PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0322
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 522aa    MW: 57285 Da    PI: 9.2945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0322genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056183123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Gh_A05G0322 61 FICEICNKGFQRDQNLQLHRRGH 83
                 89*******************88 PP
2zf-C2H212.60.0004138160123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k+H + +
  Gh_A05G0322 138 WKCEKCSKRYAVQSDWKSHSKIC 160
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.06E-66083No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.3E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456183IPR007087Zinc finger, C2H2
SMARTSM003550.0226183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.06E-6133158No hitNo description
SMARTSM00355110138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MMKGLVVDES ISNLTSTSGE VSASTNQEPL SKKKRNLPGN PDPETEVIAL SPKTLLATNR  60
FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVVRK KVYVCPETTC VHHHPSRALG  120
DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKSHSKIC GTREYRCDCG NLFSRRDSFI  180
THRAFCDALA EETARAITAA NQPGSSVSHI NMTNLESQPL LHGYALHAPS LNRDQDQRFN  240
ARVEAAGPDS GPPSINLSSS PFLLGHPLPH DENPSQNPSS TTLLPFQAPP ASPHTSATAL  300
LQKAAQMGVT LSKPLQSPVV SMQRPYYYHH QAHMCGSTTF ATSRARGLSA REELGSKFTH  360
SLSSFGNKAG VTPGFLEQVA NATKSSAVAG AGAAAPSSLL HDMMTSLSCT SELEGSSSFE  420
QSFNGTWITK RNSNNFQENY IDRRNFSETK QSQSCRSDNH EGKGSGSSSN NIGGNDRLTR  480
DFLGLKAFPH TDIPNLVGLN HHINSSSAYG QPNQHSETPW QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34134201370Zinc finger protein JACKDAW
5b3h_F8e-34134201370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187100KLKQRTNKEVVRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144591e-173JX614459.1 Gossypium hirsutum clone NBRI_GE57848 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750262.10.0PREDICTED: protein indeterminate-domain 7-like
TrEMBLA0A1U8PGB50.0A0A1U8PGB5_GOSHI; protein indeterminate-domain 7-like
STRINGGorai.009G044300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2