PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0022
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 733aa    MW: 82869.2 Da    PI: 9.9362
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0022genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox375.8e-12503547953
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ +e L e+F++n  ps+  re L+k+lgL+ ++V  WF+N R+
  Gh_A05G0022 503 PTAVEKLREVFAENELPSRFVRENLSKELGLEPEKVNKWFKNARY 547
                  678999*************************************97 PP
2PHD39.61.2e-13238293151
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C+   +  ++++vlCd +C+++fH+kCl+++l++e +p g   w+C+ C++k
  Gh_A05G0022 238 FCAKCKLreAFPDNDIVLCDgTCNRAFHQKCLDPPLDTEHIPPGdqGWFCKFCECK 293
                  699999854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.71E-14230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-12235294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.54236293IPR019787Zinc finger, PHD-finger
SMARTSM002493.2E-9238291IPR001965Zinc finger, PHD-type
PfamPF006286.8E-11238293IPR019787Zinc finger, PHD-finger
CDDcd155041.28E-32238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.608.6E-14486546IPR009057Homeodomain-like
PROSITE profilePS5007112.73492552IPR001356Homeobox domain
SuperFamilySSF466891.84E-11493557IPR009057Homeodomain-like
SMARTSM003892.7E-11494556IPR001356Homeobox domain
CDDcd000862.34E-10495556No hitNo description
PfamPF000462.0E-9503547IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MRGTGKKLTD HGSAKSSSSK REAGSKLIAT LKKFKNRCKI SHGRVRKPKH HVKKVSSTLL  60
KRKVTASVTK GTGNDVSSAR KVGCKTNLHK ANKKGSSKKL GLSKLQGKNA ICASLEENGK  120
KDNADVRIKK LTKKTKKGQK DKVELDEASR LQRRTRYLLI KMKLEQNLID AYSGEGWKGQ  180
SREKIKPEKE LQRAKKQILK CKLGIREAIR QLDSLSSVGS IEGSVIAPDG SVYHEHIFCA  240
KCKLREAFPD NDIVLCDGTC NRAFHQKCLD PPLDTEHIPP GDQGWFCKFC ECKMEIIEAM  300
NAHIGTHFSV DSHWQDIFKD EAAFPDDANA SLNPGDEWPS DDSEDDDYDP ERRENSCRIS  360
GTATDGDESD ETDNSTSLSW SVDSEDLSGF GRHENHPFDS GGDSYETSDG EILSGRRRRR  420
AVDYRKLYDE MFGKDAPPYE QVSEDEDWGP GKRKHREKES DAASTLMTLY ESETKFLNIE  480
TTEVKRQLPS DLKSRRPFFR IPPTAVEKLR EVFAENELPS RFVRENLSKE LGLEPEKVNK  540
WFKNARYLAL KSRKVERADH LQSSSPRVSK EPEVEAPKRK DTEIMALEDM SEATLVRTPK  600
RLKAKLRKSP NSKSVCTTVD RSPHNGLSIV SHTNSDKVSK ELSDDVILKK LLNVKKKGGK  660
EKRVKIIGGG GGLEAFELEM ERLCRAKVRL ENMKQTLLGL ESRKARKLNK RRRRVHEESV  720
IYIPIAELKE KVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1709714KRRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.208960.0boll
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606566.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_017606567.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-167PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0B0MRS80.0A0A0B0MRS8_GOSAR; Pathogenesis-related homeodomain-like protein
STRINGGorai.009G002500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-167pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]