PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1448
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 124aa    MW: 13944.9 Da    PI: 7.0395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1448genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.5e-10492188
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f+kvlt+ d  ++  l+lp +++++   ++ ++++  l+++d  g  W++ +  + +sg      + +GW +Fv+ ++L++gD +v++ d+++
  Gh_A04G1448  4 FVKVLTKIDIERT--LSLPDSCLQASpqSQRSHGGENLQVKDDVGILWNFHC--TIRSGVfpkLEIVSGWVQFVRFKQLNTGDAIVLYKDDDT 92
                 8899988888876..9******998898555567889***************..7777766556677********************955443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-10392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-12392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-123104No hitNo description
PfamPF023621.5E-8491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAIFVKVLTK IDIERTLSLP DSCLQASPQS QRSHGGENLQ VKDDVGILWN FHCTIRSGVF  60
PKLEIVSGWV QFVRFKQLNT GDAIVLYKDD DTLTGPHYKI EVLKGHGDDY SSFAQMYIKS  120
CHAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.17e-70PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A2P5Q7247e-85A0A2P5Q724_GOSBA; Uncharacterized protein
STRINGGorai.012G151200.12e-84(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848