PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1446
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 365aa    MW: 41888.8 Da    PI: 6.8467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1446genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.5e-1623107795
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   ++ l+ + l++p+kf++++g++   s   tl+ + g +W v+l  r   +r++l +GW++Fv+   ++ g fvvFk++g+s f  +v 
  Gh_A04G1446  23 VASILQDKKLRIPNKFVKKFGNE--LSSVATLTVPGGCQWLVEL--REDNKRIWLDNGWNSFVEYYSICIGYFVVFKYEGNSHFGVHVY 107
                  556677788********999855..7779***************..999999****************************999977665 PP
2B361.81.2e-19271362499
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +l ps+v k  +l lp+ fa+++ +g+      +tl+ ++g++W v++ y++      ++kGW eFv +n+L+egD+++F+l++++e  l+v++fr+
  Gh_A04G1446 271 ILRPSYVYKGVLLHLPRCFARRYlNGVD---GVITLQIPEGKKWPVQCVYCNDN--LKFSKGWAEFVLDNNLDEGDVCIFELINTKEIVLKVTIFRA 362
                  5789*******************85552...26***************776666..679************************999999****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-2012109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2116109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-1517108No hitNo description
PROSITE profilePS5086313.1417110IPR003340B3 DNA binding domain
SMARTSM010197.1E-1418112IPR003340B3 DNA binding domain
PfamPF023624.9E-1324107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-25259362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-26261361IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-23266361No hitNo description
SMARTSM010192.6E-18267363IPR003340B3 DNA binding domain
PROSITE profilePS5086314.48268363IPR003340B3 DNA binding domain
PfamPF023622.0E-18271362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSQPVGPSLP LNNSSCIFYK LIVASILQDK KLRIPNKFVK KFGNELSSVA TLTVPGGCQW  60
LVELREDNKR IWLDNGWNSF VEYYSICIGY FVVFKYEGNS HFGVHVYNLK SSEINYLSNN  120
SREPGDFAEI TGSSSYFLVD KDVDESLDHE KKKYKISTCL HQENELHDLR ATFQSTQDKG  180
IQFNGVELTS IGDEGGPCFS NETLRYTIKQ EVEPIMDENE PFRKFKVKEE LPTLNSPSVL  240
RRRRDVTAEE KQGAFHAASM FKPDNPFCRI ILRPSYVYKG VLLHLPRCFA RRYLNGVDGV  300
ITLQIPEGKK WPVQCVYCND NLKFSKGWAE FVLDNNLDEG DVCIFELINT KEIVLKVTIF  360
RALRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-4523836119141B3 domain-containing transcription factor VRN1
4i1k_B5e-4523836119141B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38160.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671233.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_017617322.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0B0ME640.0A0A0B0ME64_GOSAR; B3 domain-containing transcription factor VRN1-like protein
TrEMBLA0A1U8I4T70.0A0A1U8I4T7_GOSHI; B3 domain-containing transcription factor VRN1-like
STRINGGorai.012G151000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-82B3 family protein