PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G1339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22038.1 Da PI: 4.6262 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3e-14 | 19 | 66 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 kri n+ +r v fskR++g+l KA LS ++ ++ v+i+s++g++y+ Gh_A04G1339 19 KRIPNQKKRWVAFSKRKKGLLSKAARLSSITGEDIGVVIISEQGRFYT 66 79*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.497 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-14 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-16 | 12 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-12 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-12 | 20 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-12 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-12 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDEARPGRRG AGRRRIEIKR IPNQKKRWVA FSKRKKGLLS KAARLSSITG EDIGVVIISE 60 QGRFYTSDNA DAVIDRYLSI EAGKDNNVDG RKDDAGTSNQ GIVEDDNTYD GDGLDDGVTL 120 RLFPQEIGQD DDHNDDGRFG NGRVMDKQGL NLNQWDNVWK INDGEIKGEN CFMDLNKSPH 180 HDDDDGGADD DTMIHFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016737843.1 | 1e-141 | PREDICTED: serum response factor-like | ||||
Refseq | XP_017604647.1 | 1e-141 | PREDICTED: serum response factor-like | ||||
TrEMBL | A0A1U8NIN1 | 1e-139 | A0A1U8NIN1_GOSHI; serum response factor-like | ||||
STRING | Gorai.009G356000.1 | 1e-105 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18369 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 9e-11 | M-type_MADS family protein |