PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A04G1141

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 230aa MW: 26265.7 Da PI: 7.7381

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1141	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.6	2e-12	9	102	1	95
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+lt +dv k rlv+pk++ + + g + + +++l+ +g+ Wevk+++ +k+ + +l+ GWk Fv an+Lk+gD ++ d++ f++v Gh_A04G1141 9 FFKELTDNDVKK--RLVVPKECQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVrTKGYLKPILSVGWKMFVVANELKVGDRITMCKDEDGFFHYV 100 89*7777776..59*8766697543...4677899887.9****664444445899****************99986555666666 PP EE CS B3 94 vk 95 v Gh_A04G1141 101 VE 102 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.939	7	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.49E-15	7	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.59E-18	8	105	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.6E-16	8	101	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.2E-9	9	95	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-7	9	107	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MATHSGIIFF KELTDNDVKK RLVVPKECQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRT 60 KGYLKPILSV GWKMFVVANE LKVGDRITMC KDEDGFFHYV VEVEKPPAGN QHGTLPNSPA 120 PSFIHHKPDE TTVEYRREVP EDLAGAHHQP DIAPMNMPAN AWQSPSIGMF GTNMNGERAH 180 FSPMTYAVAL VMLVELEKHV LILLQIIIKT LAWTWFSDKP VLLHPHMWEK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458575.1	1e-146	PREDICTED: uncharacterized protein LOC105779374
TrEMBL	A0A1U8IMJ3	1e-116	A0A1U8IMJ3_GOSHI; uncharacterized protein LOC107898334
STRING	Gorai.012G168900.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19753	2	5