PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G1141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26265.7 Da PI: 7.7381 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 2e-12 | 9 | 102 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+lt +dv k rlv+pk++ + + g + + +++l+ +g+ Wevk+++ +k+ + +l+ GWk Fv an+Lk+gD ++ d++ f++v Gh_A04G1141 9 FFKELTDNDVKK--RLVVPKECQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVrTKGYLKPILSVGWKMFVVANELKVGDRITMCKDEDGFFHYV 100 89***7777776..59*****8766697543...4677899887.9********664444445899******************99986555666666 PP EE CS B3 94 vk 95 v Gh_A04G1141 101 VE 102 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.939 | 7 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.49E-15 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-18 | 8 | 105 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-16 | 8 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-9 | 9 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-7 | 9 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MATHSGIIFF KELTDNDVKK RLVVPKECQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRT 60 KGYLKPILSV GWKMFVVANE LKVGDRITMC KDEDGFFHYV VEVEKPPAGN QHGTLPNSPA 120 PSFIHHKPDE TTVEYRREVP EDLAGAHHQP DIAPMNMPAN AWQSPSIGMF GTNMNGERAH 180 FSPMTYAVAL VMLVELEKHV LILLQIIIKT LAWTWFSDKP VLLHPHMWEK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458575.1 | 1e-146 | PREDICTED: uncharacterized protein LOC105779374 | ||||
TrEMBL | A0A1U8IMJ3 | 1e-116 | A0A1U8IMJ3_GOSHI; uncharacterized protein LOC107898334 | ||||
STRING | Gorai.012G168900.1 | 1e-116 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19753 | 2 | 5 |