PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1140
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 277aa    MW: 29790.9 Da    PI: 6.3944
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1140genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-101093286
                 EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86
                  k+l++ d +  +rl +p k + +     gg       + ++ + g + W + +++rk++ +  v++ GW++Fv +n+Lk+gD+++ + d 
  Gh_A04G1140 10 SKKLKTTDIN--KRLAIPGKILPSLpafnGGH-----AVLIQLKYGtKIWPICCTVRKNGYKkPVFSVGWRKFVADNKLKTGDIITMYKDF 93
                 5666444444..45788888887776442222.....233333333499***998855555559**********************99442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-133106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-124104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.6157110IPR003340B3 DNA binding domain
CDDcd100175.37E-177108No hitNo description
SMARTSM010190.00289105IPR003340B3 DNA binding domain
PfamPF023621.5E-71196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASQPTKMFS KKLKTTDINK RLAIPGKILP SLPAFNGGHA VLIQLKYGTK IWPICCTVRK  60
NGYKKPVFSV GWRKFVADNK LKTGDIITMY KDFEDGDGGS HFRVEVEKRP AASNQDRSHE  120
TIPSSCVLAF NDHEVDGTNS GNEADRIPNK ALDDGAINLE GGIPIMEFPD VATDTLVDGH  180
VIAKPSVTIS GAIMTDEMKC LGITKGTDMG EPSLLLPCRA KAEREIDFLG IAEGGDAIAY  240
GSGPSDAAGE ACCNFITHHR SVTLDLVLSQ PNPYNAG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163490.0JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.10.0PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A0D2S4820.0A0A0D2S482_GOSRA; Uncharacterized protein
STRINGGorai.012G168700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2078936