![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A04G1126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27625.7 Da PI: 9.0761 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.8 | 2.5e-10 | 8 | 102 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f k+l s + ++rl++p k ++ + +++ +++ +++de+g+ W + +++rkk+g vl+kGW Fv+ +L+ gD v +++ ++ s++ + Gh_A04G1126 8 FMKIL--SRTDIKARLSIPTKKK-RCflNFQNRHQVEFKVKDENGKDWVFCCSIRKKKGYrkPVLSKGWLPFVRCWKLEIGDGVRVYRMmDKdSKEYY 102 66777..66666788****9986.445855667889****************9966666566********************9988754233255444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-16 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-12 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-16 | 6 | 108 | No hit | No description |
PROSITE profile | PS50863 | 8.727 | 6 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-8 | 8 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MAIEKPLFMK ILSRTDIKAR LSIPTKKKRC FLNFQNRHQV EFKVKDENGK DWVFCCSIRK 60 KKGYRKPVLS KGWLPFVRCW KLEIGDGVRV YRMMDKDSKE YYRIEVIKRR DSPLVRNHDA 120 EEPSALAVAS YVQNHDAEEP SALAVASYTD VEEEATVASN SSTGRTVNHE QTEGLQNQPG 180 LMFEYISLKP DITVSEPKVI ELFGLGSQEQ REMEHPSILA PHNKVEMPVS SSRAPYFKFL |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC243083 | 1e-176 | AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612803.1 | 5e-91 | PREDICTED: uncharacterized protein LOC108458073 | ||||
Refseq | XP_017612804.1 | 5e-91 | PREDICTED: uncharacterized protein LOC108458073 | ||||
TrEMBL | A0A2P5XTA3 | 1e-90 | A0A2P5XTA3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G167300.1 | 1e-90 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17835 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21550.1 | 7e-08 | VP1/ABI3-like 3 |