PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1023
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 941aa    MW: 102917 Da    PI: 6.0174
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1023genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.64.3e-138699111052
                  HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    ++ L++ F++n+yp+++++e LAk+lg+t rqV+ WF N R
  Gh_A04G1023 869 AVTQGLQSSFKQNQYPDRAMKESLAKELGITFRQVSKWFENAR 911
                  56889************************************99 PP
2PHD41.13.9e-14456511151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C++Cg+    ++++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Gh_A04G1023 456 FCALCGSkdIPANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 511
                  7******554459*******66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.88E-14446514IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.7E-14453510IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.288454511IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-10456509IPR001965Zinc finger, PHD-type
CDDcd155041.16E-26456508No hitNo description
PfamPF006282.1E-11456511IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590457508IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.8E-14849911IPR009057Homeodomain-like
SuperFamilySSF466891.33E-11853912IPR009057Homeodomain-like
SMARTSM003891.7E-11859921IPR001356Homeobox domain
PfamPF000461.8E-10869911IPR001356Homeobox domain
CDDcd000864.34E-12871911No hitNo description
PROSITE profilePS5007112.73874917IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MIEVGHTGGS SSQANSENGN HSHLHPEEST SELANEFRTE WLLTEANGSG FMNTETSEET  60
AEHSQPLCND LSKNTISESL GLLPEDSSKN IQADQISSPQ LCSAEPTFSS GELPEQQQQL  120
DSQSLPNGIG NSLSAGVSNE GMELNPKDII MGNGGKHLQL PSKDANPLGL PQELASTNPT  180
IQQPDRHCED ISKDSGLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRA LRSSDRVLRS  240
KSEEKSKATE SSKKSTATES SKKSTATELS KKSTATESSK KSTATESRKK SSATESSKKS  300
TATESSKKPT ATESSKKSTA TESSKKSTGT ESSNNLTNVD PSKQQKRKKR KREKEKEEKK  360
EVSDEYLRIR KHLRYLLNRI SYERSLIAAY SAEGWKGLSL EKLKPEKELQ RAASEILRRK  420
LKIRDLFQRI ESLCTEGRLA ESLFDSEGEI DSEDIFCALC GSKDIPANND IILCDGACDR  480
GFHQYCLQPP LLKEDIPPDD EGWLCPGCDC KFDCIELVNE SQGTNFSLED SWEKVFPEAA  540
VAAGGQNQDP NYGLPSDDSD DNDYNPDISE NDEKDQEDES SSDESDFTSA SDEVEVPAKV  600
DPYLGLPSDD SEDDDYNPDG PDQDHDNVAK SESLSSDFSS DSDDLGAMLV DDISSQKGHM  660
SNGSSRKSKS KKPKLSGKKS LNSEVLTTME PASGEDDATV SEKRSIPRLD YKRLYDETYG  720
NVPSSSSDDE DWNDGTAPRK KKIRNAEVAT TSANGNASPT GSVSVSNGLK KNPGEKRAPR  780
RSANGLKQNR GEQHTPKRSA NGLKQKPEED HTPRRCTRKK SNQKGTARSP AKLPKATPKS  840
PAKLPEPTPT PGSSGKKAGS STYKRLGEAV TQGLQSSFKQ NQYPDRAMKE SLAKELGITF  900
RQVSKWFENA RWFFNNSNNV SGASPKKVAG NDITPSARRK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345351KRKKRKR
2346351RKKRKR
3346353RKKRKREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.229990.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6143197e-31JX614319.1 Gossypium hirsutum clone NBRI_GE57612 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734492.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_016734493.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_016734494.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_016734495.10.0PREDICTED: homeobox protein HAT3.1-like
TrEMBLA0A1U8N9N80.0A0A1U8N9N8_GOSHI; homeobox protein HAT3.1-like
STRINGGorai.012G148900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain