PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0810

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 539aa MW: 60691.8 Da PI: 5.3453

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0810	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	139.7	2.9e-43	166	538	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL + +a +++++ la+ +L +se +p g++++R+a+ + + ++++ + y ++s s++ a+++f++++P+ +f+h++a + Gh_A04G0810 166 HLLKAHGDATEKNQTDLAEVILRCVSEKGNPVGETLERIAFNLSQDIQNQNNY-----Y----LMQES---SKNFEVAFRTFYQIFPYGRFAHFAATS 251 778888899999***************************876666665544.....2....22333...45677889*************** PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aIlea+ ++ e++Hi+Dfd++ G+QWp+L++a+a + +lR+T ++ + +s + ++t++ L + A+++g++f+ + + ++dl e +++k Gh_A04G0810 252 AILEAIPNDaEQLHIVDFDLGVGIQWPSLIEAIAGN-WQHKTLRLTSIKLGNDHSPWRFQHTRRLLCDHARSFGLNFKVEEI---GIHDLVNEFMAIK 345 **99889*******************95.56689****9999**********************99...6677766666676 PP GRAS 198 p.....gEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqe.....adhnsesFlerflealeyysalfdsleak 274 + +E la n+++ l ++ + ++++ +e+L + k+l + ++++ e + d +++sF + f l +y a ++s+e++ Gh_A04G0810 346 KqgggtKEWLAFNCMVGLPHMGK--NKSRKLVNEFLGIAKQLltscgdntrttKRGIITLGEGDaceklKDGTGSSFGAYFNAQLMHYQATMESMESN 441 667777**********983..33334456777777766333332222215569999999854332344677******************* PP GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGF......kpvplsekaakqaklllrkvksdgyrve...eesgslvlgW 362 ++++ ++r +E ++g++i+ ++kW+e+ e++ F + +++s +++ak ++++ + + y+v ++ ++l+l W Gh_A04G0810 442 MAKHLvQARLAMECLFVGPNICAQAW------------FQKWKEMNETCYFqagttlEGLKVSRGRVMEAKEMVKERE-NSYEVSiggDSGNELTLDW 526 988878**********975544............445555544443311111156889999********9.44888877788999* PP GRAS 363 kdrpLvsvSaWr 374 ++ +Lv vS+Wr Gh_A04G0810 527 RGITLVKVSSWR 538 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.804	138	539	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-40	166	538	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MFISYFIYTY AKIQSKTNFA LNITKMMQSQ DFTPSWPLVN STIDQLEPYG FNMAVHFDAA 60 SSFHTSVDSF FSNEILPFSP YDFDDDLLRV TVPWEDISAP LAGLDSMLTD GVEESFPLSS 120 QRQDVWSPCS SIRSSEASTD TMQSPLTMPV LGGEAMAIDN QLPLFHLLKA HGDATEKNQT 180 DLAEVILRCV SEKGNPVGET LERIAFNLSQ DIQNQNNYYL MQESSKNFEV AFRTFYQIFP 240 YGRFAHFAAT SAILEAIPND AEQLHIVDFD LGVGIQWPSL IEAIAGNWQH KTLRLTSIKL 300 GNDHSPWRFQ HTRRLLCDHA RSFGLNFKVE EIGIHDLVNE FMAIKKQGGG TKEWLAFNCM 360 VGLPHMGKNK SRKLVNEFLG IAKQLLTSCG DNTRTTKRGI ITLGEGDACE KLKDGTGSSF 420 GAYFNAQLMH YQATMESMES NMAKHLVQAR LAMECLFVGP NICAQAWFQK WKEMNETCYF 480 QAGTTLEGLK VSRGRVMEAK EMVKERENSY EVSIGGDSGN ELTLDWRGIT LVKVSSWRN

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MFISYFIYTY AKIQSKTNFA LNITKMMQSQ DFTPSWPLVN STIDQLEPYG FNMAVHFDAA  60
SSFHTSVDSF FSNEILPFSP YDFDDDLLRV TVPWEDISAP LAGLDSMLTD GVEESFPLSS  120
QRQDVWSPCS SIRSSEASTD TMQSPLTMPV LGGEAMAIDN QLPLFHLLKA HGDATEKNQT  180
DLAEVILRCV SEKGNPVGET LERIAFNLSQ DIQNQNNYYL MQESSKNFEV AFRTFYQIFP  240
YGRFAHFAAT SAILEAIPND AEQLHIVDFD LGVGIQWPSL IEAIAGNWQH KTLRLTSIKL  300
GNDHSPWRFQ HTRRLLCDHA RSFGLNFKVE EIGIHDLVNE FMAIKKQGGG TKEWLAFNCM  360
VGLPHMGKNK SRKLVNEFLG IAKQLLTSCG DNTRTTKRGI ITLGEGDACE KLKDGTGSSF  420
GAYFNAQLMH YQATMESMES NMAKHLVQAR LAMECLFVGP NICAQAWFQK WKEMNETCYF  480
QAGTTLEGLK VSRGRVMEAK EMVKERENSY EVSIGGDSGN ELTLDWRGIT LVKVSSWRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-15	182	538	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613547.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0D2V5H5	0.0	A0A0D2V5H5_GOSRA; Uncharacterized protein
STRING	Gorai.012G118000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	4e-21	GRAS family protein